View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_high_15 (Length: 274)
Name: NF21257_high_15
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 16420509 - 16420245
Alignment:
| Q |
1 |
ccctctctctttcatctttgtcatttgcatgcaatctcttggccctaatttttattttagaaataaattgttcttctctctnnnnnnng-tgacaatcaa |
99 |
Q |
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| T |
16420509 |
ccctctctctttcatctttgtcatttgcatgcaatctcttggccttaatttttgttttagaaataaattgttcttctctctaaaaaaaactgacaatcaa |
16420410 |
T |
|
| Q |
100 |
tgtcaatatgtgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatttcacatataagtgcaatggccgtgcttcttcaaaat |
199 |
Q |
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| T |
16420409 |
tgtcaatatgtgtggtcctcgtatgaaaggctggatttaaggcaatatgcaacacgacttgatttcacatataagtgcactggtcgtgcttcttcaaaat |
16420310 |
T |
|
| Q |
200 |
gacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatg |
264 |
Q |
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| T |
16420309 |
gaagtttcttgagtgactacttcaactaaaatgagatcacatgttactagtctcatgggcctatg |
16420245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 16476693 - 16476841
Alignment:
| Q |
102 |
tcaatatgtgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatt-tcacatataagtg-caatggccgtgcttcttcaaaat |
199 |
Q |
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||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||| || |
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| T |
16476693 |
tcaatatgtctggtcctcgtttgaatcactggattttaggcaatatgcaacacgacttgattatcacatataagtgtcattggtcgtgcttcttcgaatc |
16476792 |
T |
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| Q |
200 |
gacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactag |
249 |
Q |
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| T |
16476793 |
gaagttccttgagtaactacttcaacc-aaatgagttcacatgttactag |
16476841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 45433782 - 45433931
Alignment:
| Q |
102 |
tcaatatgtgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatt-tcacatataagtg-caatggccgtgcttcttcaaaat |
199 |
Q |
| |
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||||||||| |||||||| | ||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||| || ||| |||||||||||||| | |
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| T |
45433782 |
tcaatatgtttggtcctctcatgaaagactggatttgaggcaatatgcaacacggcttgattgtcacatataagtgtcattggtcgtgcttcttcaaatt |
45433881 |
T |
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| Q |
200 |
gacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagt |
250 |
Q |
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| T |
45433882 |
gaagttctttgagtaattgcttcaacc-aaatgagttcacatgttactagt |
45433931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 14156700 - 14156849
Alignment:
| Q |
102 |
tcaatatgtgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatt-tcacatataagtg-caatggccgtgcttcttcaaaat |
199 |
Q |
| |
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||||||||| |||||||| | ||||| ||| |||| |||||||||||||| || ||||||| ||||||||||| | || ||| ||| |||||||||| | |
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| T |
14156700 |
tcaatatgtttggtcctctcatgaaagactgaatttgaggcaatatgcaacgcggcttgattgtcacatataagagtcattggtcgtacttcttcaaatt |
14156799 |
T |
|
| Q |
200 |
gacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagt |
250 |
Q |
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| T |
14156800 |
gaagttctttgagtaactgcttcaacc-aaatgagttcacatgttactagt |
14156849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 19127118 - 19126991
Alignment:
| Q |
130 |
ctggatttaaggcaatatgcaacacgacttgattt-cacatataagtg-caatggccgtgcttcttcaaaatgacgtttcttgagtgactacttcaacca |
227 |
Q |
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|||||||| |||| |||||||||| ||||| |||| |||||||||| | || ||||| ||||||||| || ||| ||| |||||| | | ||||||||| |
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| T |
19127118 |
ctggatttgaggcgatatgcaacatgactttattttcacatataagcgtcattggccatgcttcttcgaattgaagttctttgagtaaatgcttcaacca |
19127019 |
T |
|
| Q |
228 |
aaatgagaccacatgttactagtctcatg |
256 |
Q |
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|| |||| |||||||||||||| ||||| |
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| T |
19127018 |
aa-tgagttcacatgttactagtgtcatg |
19126991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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