View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21257_high_2 (Length: 636)
Name: NF21257_high_2
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 33034521 - 33034068
Alignment:
| Q |
19 |
taaagtgctagatagatctgtccaccatactataagacattcattcagtcagcactaagactcaaaaagggcagcaaagtttcgacaacaaacaaatggc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33034521 |
taaagtgctagatagatctgtccaccatactataagacattcattcagtcagcactaagactcaaaaagggcagcaaagtttcgacaacaaacaaatggc |
33034422 |
T |
|
| Q |
119 |
nnnnnnn-ttggaccagaaggtgttagagaatatatttcaattgcttatcaaagtcaatagnnnnnnnttactttacaaaaactgctgattcctgtccaa |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33034421 |
aaaaaaaattggacaagaaggtgttagagaatatatttcaattgcttatcaaagtcaatagaaaaaaattactttacaaaaactgctgattcctgtccaa |
33034322 |
T |
|
| Q |
218 |
tgtccatttgcctctttttgaacttggagagtatctgatgcaaaatattgcaaagctgcagaaaaaatatcatttcactttgaggttgatcaaacacatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33034321 |
tgtccatttgcctctttttgaacttggagagtatctgatgcaaaatattgcaaagctgcagaaaaaatatcatttcactttgaggttgatcaaacacatg |
33034222 |
T |
|
| Q |
318 |
gatgacctgcaaaatcataagtatgaaaataatgcttaaaagcattggaaaatacataactagttgatgatgctcacgaacttttccaaacttatgacat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33034221 |
gatgacctgcaaaatcataagtatgaaaataatgcttaaaagcattggaaaatacataactagttgatgatgctcacgaacttttccaaacttatgacat |
33034122 |
T |
|
| Q |
418 |
tacttaccatgtagtagtcggggcgaaaattgaaattctcacaatacagataag |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33034121 |
tacttaccatgtagtagtcggggcgaaaattgaaattctcacaatacagataag |
33034068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 505 - 623
Target Start/End: Complemental strand, 33034070 - 33033952
Alignment:
| Q |
505 |
aagtaattgctaatgagccatatcccagcttgttactttcacatatatcaaattctacatctagaattatgttaagactatccaataaaagcagggaaat |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33034070 |
aagtaattgctaatgagccatatcccagcttgttactttcacatatatcaaattctacatctagaattatgttaagactatccaataaaagcagggaaat |
33033971 |
T |
|
| Q |
605 |
ttatgattcatcctttgct |
623 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33033970 |
ttatgattcatcctttgct |
33033952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 573
Target Start/End: Original strand, 17075608 - 17075653
Alignment:
| Q |
528 |
cccagcttgttactttcacatatatcaaattctacatctagaatta |
573 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
17075608 |
cccaactttttactttcacatatatcaaattctccatctataatta |
17075653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University