View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_high_7 (Length: 471)
Name: NF21257_high_7
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 3208407 - 3208850
Alignment:
| Q |
11 |
atcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208407 |
atcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccg |
3208506 |
T |
|
| Q |
111 |
tcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208507 |
tcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggac |
3208606 |
T |
|
| Q |
211 |
ctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208607 |
ctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctcc |
3208706 |
T |
|
| Q |
311 |
gagggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208707 |
gagggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaa |
3208806 |
T |
|
| Q |
411 |
attgccaagtgtgcatatggtgccatgccaattgcagtaccatt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208807 |
attgccaagtgtgcatatggtgccatgccaattgcagtaccatt |
3208850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 3202433 - 3202876
Alignment:
| Q |
11 |
atcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccg |
110 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
3202433 |
atcatcacttgtgttaattgcacctgcatacacaagtggcaataatgttgatgcaaagtcttttggttggaaaactgattctccgagatattccgtccca |
3202532 |
T |
|
| Q |
111 |
tcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggac |
210 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||| |
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| T |
3202533 |
tccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcattagccaatgtaccatgaaaaggac |
3202632 |
T |
|
| Q |
211 |
ctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctcc |
310 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||| |
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| T |
3202633 |
ctgaatttccagcagaacaactaacaaaaattcccttttgaattgcactaaatgcaccaagtgcaattccactttcaaagaaagaagtagagggttgtcc |
3202732 |
T |
|
| Q |
311 |
gagggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaa |
410 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||| |||||||| |||||| ||| | ||||||||||||| |
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| T |
3202733 |
aagggagagagaaagaacatcaacaccatcatcaacagcaacatccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaa |
3202832 |
T |
|
| Q |
411 |
attgccaagtgtgcatatggtgccatgccaattgcagtaccatt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3202833 |
attgccaagtgtgcatatggtgccatgccaattgcagtaccatt |
3202876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 439
Target Start/End: Original strand, 3216349 - 3216774
Alignment:
| Q |
14 |
atcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccgtcg |
113 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||| || ||||||||||||| ||||| | ||||| | |
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|
| T |
3216349 |
atcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacactgattctccaatatatttttccccgttg |
3216448 |
T |
|
| Q |
114 |
ccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctg |
213 |
Q |
| |
|
||||| ||||||| ||| || |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
3216449 |
ccaagtttagctattgcttctatttttctatcagttgtgctagcaccaacagttagaatccatggtgcttcattagacgttgtaccataatcaggaccaa |
3216548 |
T |
|
| Q |
214 |
aatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctccgag |
313 |
Q |
| |
|
||||| ||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||| || |
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| T |
3216549 |
aatttccagctgagcaactaacgaaaattcccttttgatttgcactaaatgcaccaagtgcaattacatcttcaaagaaagggttggtgggtccgttaag |
3216648 |
T |
|
| Q |
314 |
ggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaatt |
413 |
Q |
| |
|
||||| ||||||||||||||| | || |||||||||||||||||||| |||||| ||| ||| |||| |||||| | || ||||||||||||| ||| |
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|
| T |
3216649 |
ggagattgaaagtacatcaacaccgtcttcaactgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagatt |
3216748 |
T |
|
| Q |
414 |
gccaagtgtgcatatggtgccatgcc |
439 |
Q |
| |
|
||||||||||||| |||||||||||| |
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|
| T |
3216749 |
gccaagtgtgcatctggtgccatgcc |
3216774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 292
Target Start/End: Original strand, 3226373 - 3226532
Alignment:
| Q |
133 |
caatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctgaatttgcagctgaacaact |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || ||||| || |||||||| || | ||| | ||| |||||| || |||||||| || ||||| |
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|
| T |
3226373 |
caatttttctgtcaattgtgctagcaccaacagtgaggatccaaggagcttcattggagagagtgctatatccaggaccagagtttgcagcagagcaact |
3226472 |
T |
|
| Q |
233 |
aacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaa |
292 |
Q |
| |
|
|||||||| || |||||| ||||| ||| ||||||| ||||||| ||||||||||| |
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|
| T |
3226473 |
aacaaaaacaccattttgagttgcagcaaaagcaccaattgcaattgggtcttcaaagaa |
3226532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 292
Target Start/End: Original strand, 3221391 - 3221550
Alignment:
| Q |
133 |
caatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctgaatttgcagctgaacaact |
232 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || | ||| || |||||||| || | ||| | || |||||| || |||||||| || ||||| |
|
|
| T |
3221391 |
caatttttctatcaattgtgctggcaccaacagtgaggacccaaggagcttcattggagagagtgctgtatccaggaccggagtttgcagcagagcaact |
3221490 |
T |
|
| Q |
233 |
aacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaa |
292 |
Q |
| |
|
|||||||| || |||||| | ||| ||| ||||||| ||||||| ||||||||||| |
|
|
| T |
3221491 |
aacaaaaacaccattttgagtagcagcaaaagcaccaattgcaattgggtcttcaaagaa |
3221550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 292
Target Start/End: Original strand, 3231624 - 3231783
Alignment:
| Q |
133 |
caatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctgaatttgcagctgaacaact |
232 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| || ||||| || |||||||| || | ||| | || |||||| || |||||||| || ||||| |
|
|
| T |
3231624 |
caatttttctatcaattgtgcttgcaccaacagtgaggatccaaggagcttcattggaaagagtgctgtatccaggaccagagtttgcagcagagcaact |
3231723 |
T |
|
| Q |
233 |
aacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaa |
292 |
Q |
| |
|
|||||||| || |||||| | ||| ||| ||||||| ||||||| ||||||||||| |
|
|
| T |
3231724 |
aacaaaaacaccattttgagtagcagcaaaagcaccaattgcaattgggtcttcaaagaa |
3231783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 3178415 - 3178363
Alignment:
| Q |
135 |
atttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcatt |
187 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || ||||| || |||||||| |
|
|
| T |
3178415 |
atttttctgtcaattgtgcttgcacctacagtgaggatccaaggagcttcatt |
3178363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 3240425 - 3240477
Alignment:
| Q |
135 |
atttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcatt |
187 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || ||||| || |||||||| |
|
|
| T |
3240425 |
atttttctgtcaattgtgcttgcacctacagtgaggatccaaggagcttcatt |
3240477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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