View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21257_high_8 (Length: 435)
Name: NF21257_high_8
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 33696335 - 33696691
Alignment:
| Q |
17 |
acaacaagtctctttcagttcacaatcatgtttgaataatgaacaaagtcaaggtggtactattaccaactttgcaacagttgatgaaacatcatggatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696335 |
acaacaagtctctttcagttcacaatcatgtttgaataatgaacaaagtcaaggtggtactattaccaactttgcaacagttgatgaaacatcatggatt |
33696434 |
T |
|
| Q |
117 |
aatgttccatcttctgctccaatatctgttcctccaaatgctatagggatttcagcaggagatgcaagcagctgcacttctagctatggaggaggaggag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696435 |
aatgttccatcttctgctccaatatctgttcctccaaatgctatagggatttcagcaggagatgcaagcagctgcacttctagctatggaggaggaggag |
33696534 |
T |
|
| Q |
217 |
gaccctctccagtatcttattggtctgaa-nnnnnnnngaggaccccattatgcatgatttatcttaatattcaatttctttgaagttgaattattgtgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33696535 |
gaccctctccagtatcttattggtctgaatttttttttgaggaccccattatgcatgatttatcttaatattaaatttctttgaagttgaattattgtgt |
33696634 |
T |
|
| Q |
316 |
gtgactgtgtgttatgcctctgtcagcttattgnnnnnnncttcccatttgattaaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33696635 |
gtgactgtgtgttatgcctctgtcagcttattgtttttttcttcccatttgattaaa |
33696691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University