View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_low_1 (Length: 853)
Name: NF21257_low_1
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 17 - 853
Target Start/End: Original strand, 30575941 - 30576777
Alignment:
| Q |
17 |
gagcaatcgagtgaaaaatatacctgaaattcatataaatgttgagcaaaaacaactaccaattccaagagcagaaagttcaaccacattgtacattttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30575941 |
gagcaatcgagtgaaaaatatacctgaaattcataaaaatgttgagcaaaaacaactaccaattccaagagcagaaagttcaaccgcattgtacattttt |
30576040 |
T |
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| Q |
117 |
gatagagtcatatgaaaggaaaaactttcccaaccacgacatacagatctggtccgaatctgtgcttgccgagaatgaatgactttgttgtcgtagtggt |
216 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30576041 |
gatagagccatatgaaaggaaaaactttcccaactgcgacatacagatctggtccgaatctgtgcttgccgagaatgaatgactttgttgtcgtagtggt |
30576140 |
T |
|
| Q |
217 |
tggtttcttccataatatcgacgggagataatacagaggaaggagaacaattatattgaagaaagaaccattgattaatggatcagcattacattaaatt |
316 |
Q |
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| T |
30576141 |
tggtttcttccataatatcgacgggagataatacagaggaaggagaacaattatattgaagaaagaaccattgattaatggatcagcattacattaaatt |
30576240 |
T |
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| Q |
317 |
tatatacaagagggatgaggaggactattacattgaagctatagtaatgaaaataacaattcaccaaactttgtaattggcaagaaccagaatcaagaat |
416 |
Q |
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| T |
30576241 |
tatatacaagatggatgaggaggactattacattgaagctatagtaatgaaaataacaattcagcaaactttgtaattggcaagaaccagaatcaagaat |
30576340 |
T |
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| Q |
417 |
gtgtgaagtgtgaacaatattgttgtgtgaccttgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaagagaact |
516 |
Q |
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| T |
30576341 |
gtgtgaagtgtgaacaatattgttgtgtgaccttgttaggaacgaagatattgaattgaataaaaagaacatttctgttaagaaaataggaaagagaact |
30576440 |
T |
|
| Q |
517 |
ctcttccaagggtttccctatcgacaacagagccactgatctattcacagaatattaacaaatctcaattcctccctatccttccattctcctatttata |
616 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30576441 |
ctcttccaagggtttccctatcgacaacagaaccactgatctattcacagaatattaacaaatctcaattcctccctatacttccattctcctatttata |
30576540 |
T |
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| Q |
617 |
cacgcaactcaataattaatcaattaagtaactcctccttatactataatgttacttacttcttacctttagtcctaacagacacctccttatgctatat |
716 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| |
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| T |
30576541 |
cacgcaactcaataactaatcaattaagtaactcctccttatactataatgttacttacttcttacctttaatcctaacaaacacctccttattctatat |
30576640 |
T |
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| Q |
717 |
tgttgcaaactccttcttatcctaacaaactccttatcatatatccgaacagacctcaaaacatcataatagaaaaatattcagtgaggtaaaatcacga |
816 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30576641 |
tgttacaaactcctttttatcctaacaaactccttatcatatatccgaacagacctcaaaacatcataatagaaaaatattcagtgagggaaaatcacga |
30576740 |
T |
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| Q |
817 |
agatggcctgatgatcatcacagctaacttaggggga |
853 |
Q |
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| T |
30576741 |
agatggcctgatgatcatcacagctaacttaggggga |
30576777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 658
Target Start/End: Complemental strand, 38760569 - 38760503
Alignment:
| Q |
592 |
ctatccttccattctcctatttatacacgcaactcaataattaatcaattaagtaactcctccttat |
658 |
Q |
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| T |
38760569 |
ctatccttctattctcctatttatacatgctactctataactaatcaattaactaactcctctttat |
38760503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 21524287 - 21524226
Alignment:
| Q |
450 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
511 |
Q |
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| T |
21524287 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21524226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 21534847 - 21534786
Alignment:
| Q |
450 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
511 |
Q |
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| T |
21534847 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21534786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 20642045 - 20642106
Alignment:
| Q |
450 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
511 |
Q |
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|||||||||||||||| ||| ||| |||| |||||| | || | |||||||||||||||||| |
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| T |
20642045 |
tgttaggaaccaagaatttgtattcaatagaaagaaaacttttattaagaaaataggaaaga |
20642106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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