View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21257_low_10 (Length: 431)
Name: NF21257_low_10
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 22914047 - 22914449
Alignment:
| Q |
9 |
atcataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22914047 |
atcataggctaagagatttatcaacaaaatatggacccttaatgcatctaaagcttggagaagtttctactattgtggtatcatcagcagaatatgctaa |
22914146 |
T |
|
| Q |
109 |
agaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagatcttgagttataattctattggtttgtctttttcacct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914147 |
agaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagataatgagttataattctattggtttgtctttttcacct |
22914246 |
T |
|
| Q |
209 |
tatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914247 |
tatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatga |
22914346 |
T |
|
| Q |
309 |
ctaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagtgaattcaagaatatttttaatcacttcaagagttgcctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914347 |
ctaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagtgaattcaagaatatttttaatcacttcaagagttgcctt |
22914446 |
T |
|
| Q |
409 |
tgg |
411 |
Q |
| |
|
||| |
|
|
| T |
22914447 |
tgg |
22914449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 22934044 - 22933642
Alignment:
| Q |
9 |
atcataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22934044 |
atcataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtatcatcagcagaatatgctaa |
22933945 |
T |
|
| Q |
109 |
agaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagatcttgagttataattctattggtttgtctttttcacct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933944 |
agaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagataatgagttataattctattggtttgtctttttcacct |
22933845 |
T |
|
| Q |
209 |
tatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22933844 |
tatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgagccgaagagatga |
22933745 |
T |
|
| Q |
309 |
ctaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagtgaattcaagaatatttttaatcacttcaagagttgcctt |
408 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |
|
|
| T |
22933744 |
ctaatcttatcaaatggatagcttcaaaagaaggatcagaaattaatctcaccaaagaagttttttcaagaatatttttaatcacttcaagggtagcctt |
22933645 |
T |
|
| Q |
409 |
tgg |
411 |
Q |
| |
|
||| |
|
|
| T |
22933644 |
tgg |
22933642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 22939454 - 22939814
Alignment:
| Q |
9 |
atcataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
|
|
| T |
22939454 |
atcataggctaagagatttatcaacaaaatatggaccattaatgcatctaaagcttggagaagtttctactattgtggtttcatcagctgaatatgcaaa |
22939553 |
T |
|
| Q |
109 |
agaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagatcttgagttataattctattggtttgtctttttcacct |
208 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||| ||||| ||||| |
|
|
| T |
22939554 |
agaagtgatgaaaaaccatgatcttgtctttgcatcaaggcctccaatccaagcttcaaagatcatgagttatgattctcttggtttagcttttgcacct |
22939653 |
T |
|
| Q |
209 |
tatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatga |
308 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||| || || ||||||||||||||||| |||||||||||||||||| |||| |||||| | | |
|
|
| T |
22939654 |
tatggtgattattggagaaaccttagaaaaatttgtacacttgagctattaagttcaaaacgtgtccaatcttttcaaccaattagaagtgaagaggtaa |
22939753 |
T |
|
| Q |
309 |
ctaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagt |
369 |
Q |
| |
|
||||||||||||| |||||| |||| || ||||||||| |||| ||| | ||||||||||| |
|
|
| T |
22939754 |
ctaatctaatcaagtggatatcttctaaagaaggatcacaaatcaattttaccaaagaagt |
22939814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 22947614 - 22947532
Alignment:
| Q |
198 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||| |||||||||||||||| |
|
|
| T |
22947614 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagcataaaacgtgttcaatct |
22947532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 22987346 - 22987298
Alignment:
| Q |
198 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22987346 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
22987298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 22973452 - 22973374
Alignment:
| Q |
198 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttca |
276 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |||||| | | |||||||||||| |||||||||||| |
|
|
| T |
22973452 |
ctttttcaccatatggtgattattggagacagcttagaaagatttgtaccgttgaacttttaagtataaaacgtgttca |
22973374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 23018579 - 23018462
Alignment:
| Q |
34 |
aaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaaagaagtgttgaaaacacatgatctt |
133 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||| || || | ||| || || || ||||||| |||||| || |
|
|
| T |
23018579 |
aaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatatt |
23018480 |
T |
|
| Q |
134 |
gtctttgcatcaaggcct |
151 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
23018479 |
cactttgcaacaaggcct |
23018462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 23141421 - 23141381
Alignment:
| Q |
206 |
ccttatggtgattattggagacaacttagaaaaatttgtgc |
246 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
23141421 |
ccttatggtaattattggagacagctaagaaaaatttgtgc |
23141381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 23611411 - 23611363
Alignment:
| Q |
198 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23611411 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
23611363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 14307524 - 14307476
Alignment:
| Q |
198 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14307524 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
14307476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University