View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_low_18 (Length: 271)
Name: NF21257_low_18
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 30576994 - 30576754
Alignment:
| Q |
19 |
aaccctcaccaattctcacattagaatattagcagataggaacattaattcattctcaatctgttgagccatttattctttaattcgatcctttctttta |
118 |
Q |
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| T |
30576994 |
aaccctcaccaattctcacattagaatattagcagataggaacattaattcattctcaatctgttgagccatttattctttaatttgatcctttctttta |
30576895 |
T |
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| Q |
119 |
tgaatgcggttcnnnnnnnacaatttggatactcaactcttgatatcaacatctagtgggggcgttacaagtttcttgatattcttaaaccagactaagt |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30576894 |
tgaatgcggttctttttttacaatttggatactcaactcttgatatcaacatctagtgggggcgttacaagtttcttgatattcttaaaccagactaagt |
30576795 |
T |
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| Q |
219 |
tggtttgaggnnnnnnnnccccctaagttagctgtgatgat |
259 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
30576794 |
tggtttgaggttttttttccccctaagttagctgtgatgat |
30576754 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 9783270 - 9783336
Alignment:
| Q |
22 |
cctcaccaattctcacattagaatattagcagataggaacatt--aattcattctcaatctgttgag |
86 |
Q |
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|||||||||| ||||| |||||||||| ||||||| ||||||| ||||| ||||||||||| |||| |
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| T |
9783270 |
cctcaccaatgctcaccttagaatattggcagatatgaacattttaattctttctcaatctgctgag |
9783336 |
T |
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