View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_low_28 (Length: 231)
Name: NF21257_low_28
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 10545045 - 10545233
Alignment:
| Q |
1 |
ttcaaaaatggggtgaaagagctccacatagaactgctgaagattcagcttatgctgttgcacgttttttccaaaatggtggtgtatttaacaattacta |
100 |
Q |
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| T |
10545045 |
ttcaaaaatggggtgaaagagctccacatagaactgctgaagattcagcttatgctgttgcacgttttttccaaaatggtggtgtatttaacaattacta |
10545144 |
T |
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| Q |
101 |
catgtaccatggaggaaccaattttggtcgcacatctggtggaccatatattattacatcttatgactatgatgcaccgatcaacgagt |
189 |
Q |
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| T |
10545145 |
catgtaccatggaggaaccaattttggtcgcacatctggtggaccatatattataacatcttatgactatgatgcaccgatcaacgagt |
10545233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 9643101 - 9643276
Alignment:
| Q |
3 |
caaaaatggggtgaaagagctccacatagaactgctgaagattcagcttatgctgttgcacgttttttccaaaatggtggtgtatttaacaattactaca |
102 |
Q |
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| T |
9643101 |
caaaaatggggtgaaagggttccacatagaagtgctgaagattcagctttctctgtggcacgttttttccaaaatggtggtgtattaaacaattactaca |
9643200 |
T |
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| Q |
103 |
tgtaccatggaggaaccaattttggtcgcacatctggtggaccatatattattacatcttatgactatgatgcacc |
178 |
Q |
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| T |
9643201 |
tgtaccatggaggaacaaactttggtcgcaccgcaggtgggccgtatataacaacatcatatgactatgatgcacc |
9643276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 278884 - 279059
Alignment:
| Q |
3 |
caaaaatggggtgaaagagctccacatagaactgctgaagattcagcttatgctgttgcacgttttttccaaaatggtggtgtatttaacaattactaca |
102 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||| | | | ||||||||||| || ||||||||||||| | | ||||||||| |
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| T |
278884 |
caaaaatggggtgaaaggaggccacatagaacagctgaagattcagcattttcagttgcacgtttctttcaaaatggtggtgccctccaaaattactact |
278983 |
T |
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| Q |
103 |
tgtaccatggaggaaccaattttggtcgcacatctggtggaccatatattattacatcttatgactatgatgcacc |
178 |
Q |
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|||| ||||||||||| |||||||| || || | ||||| || | ||| |||||| | ||||||||||||||||| |
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| T |
278984 |
tgtatcatggaggaacaaattttggacgaaccgcgggtggcccgtttatcattacaacatatgactatgatgcacc |
279059 |
T |
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