View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_low_3 (Length: 627)
Name: NF21257_low_3
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 259 - 609
Target Start/End: Complemental strand, 44344316 - 44343952
Alignment:
| Q |
259 |
aatcccagcaataataataatctgaattttccttctcaatttctcattttcatcaccttttggttcttccacttgtaagtaacaatgcattgtcttactt |
358 |
Q |
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| T |
44344316 |
aatcccagcaataataataatctgaattttccttctcaatttctcattttcatcaccttttggttcttccagttgtaagtaacaatgcattgtcttactt |
44344217 |
T |
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| Q |
359 |
atcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatgcattatatatattcttaaatttagctat |
458 |
Q |
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| T |
44344216 |
atcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatgcatt----atattcttaaatttagctat |
44344121 |
T |
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| Q |
459 |
cataataaaatgtggtacactaactcaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgt------------ |
546 |
Q |
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| T |
44344120 |
cataataaaatgtggtacactaactaaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgtagcaacagctcc |
44344021 |
T |
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| Q |
547 |
------agcaccacaaactccaggcataaaagcaaaccagcgatcagaagcaccttctgcaggtggaat |
609 |
Q |
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| T |
44344020 |
tccaacagcaccacaaactccaggcacaaaagcaaaccagcgatcagaagcaccttctgcaggtggaat |
44343952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 44344572 - 44344383
Alignment:
| Q |
1 |
cgacatggaagagaaacaagtgttgtgcatgctacattacacgttccaatggtttatcttttcttcaccaaattttggatcatcacaaactcctactcca |
100 |
Q |
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| T |
44344572 |
cgacatggaagagaaacaagtgttgtgcatgctacattacacgttccaatggtttatcttttgttcaccaaattttggatcatcacaaactcctactcca |
44344473 |
T |
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| Q |
101 |
acgcctttcnnnnnnnngaaccaacaattcttcctcttctcttctcatcatttcattttcacttgtaagtataaaaactaacatacatct |
190 |
Q |
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| T |
44344472 |
acgcctttcttttttttgaaccaacaattcttcctcttctcttctcatcatttcattttcacttgtaagtaaaaaaactaacctacatct |
44344383 |
T |
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