View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_low_4 (Length: 588)
Name: NF21257_low_4
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 62 - 570
Target Start/End: Original strand, 37893806 - 37894314
Alignment:
| Q |
62 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893806 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
37893905 |
T |
|
| Q |
162 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctgnnnnnnngtcattgactatggaaatg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37893906 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctgaaaaaaagtcattgactatggaaatg |
37894005 |
T |
|
| Q |
262 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894006 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttt |
37894105 |
T |
|
| Q |
362 |
tggtcttgctgtttggtctctatgttaagaatgtaattaattcannnnnnncaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaa |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894106 |
tggtcttgctgtttggtctctatgttaagaatgtaattaattcatttttttcaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaa |
37894205 |
T |
|
| Q |
462 |
ttgtgttatgatgtcaataagtacggtattgatacaagaattatctgcatgtgtaataattgtataagaataaagaatgtttatgtttctaattattatc |
561 |
Q |
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| T |
37894206 |
ttgtgttatgatgtcaataagtacggtattgatagaagaattatcagcatgtgtaataattgtataagaataaagaatgtttatgtttctaattattatc |
37894305 |
T |
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| Q |
562 |
ggcatgtgt |
570 |
Q |
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|||||||| |
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| T |
37894306 |
tgcatgtgt |
37894314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 62 - 557
Target Start/End: Original strand, 37188904 - 37189400
Alignment:
| Q |
62 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
161 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37188904 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaaggaa |
37189003 |
T |
|
| Q |
162 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctgnnnnnnngtcattgactatggaaatg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
37189004 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagtatacgaaaaaa-gtcattgactatggaaatg |
37189102 |
T |
|
| Q |
262 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189103 |
gtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttt |
37189202 |
T |
|
| Q |
362 |
tggtcttgctgtttggtctctatgttaagaatgtaattaattca----nnnnnnncaggaggacacaaaaaccaagagttgtaatttgattaattacaac |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
37189203 |
tggtcttgctgtttggtctctatgttaagaatgtaattaattcattttttttcttgaggaggacacaaaaaccaagagttgtaa-ttgattaatttcaac |
37189301 |
T |
|
| Q |
458 |
tcaattgtgttatgatgtcaataagtacggtattgatacaagaattatctgcatgtgtaataattgtataagaataaagaatgttt-atgtttctaatta |
556 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||| |
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| T |
37189302 |
tcaattgtgttatcatgtcaataagtacggtattgatacaagaattatctgcatgtgtaataat--tatacgaataaagaatgtttaaggtttctaatta |
37189399 |
T |
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