View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_low_5 (Length: 556)
Name: NF21257_low_5
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 22 - 556
Target Start/End: Original strand, 2723021 - 2723555
Alignment:
| Q |
22 |
acaccaattacaaattctttgaaagatttacttccaaggacatacaagaataatagagtgaccaatatgtttgtgagcactgtccttgtaatcagcactg |
121 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2723021 |
acaccaattacaaatgctttaaaagatttacttccaaggacatacaagaataatagagtgaccaatatgtttgtgagcactgtccttgtcatcagcactg |
2723120 |
T |
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| Q |
122 |
ttattgttgcattggctgttcctttctttgggtctctcatgccacttgttggagcatttttaagtgttactgcttctattttgcttccatgtttgtgtta |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2723121 |
ttattgttgcattggctgttcctttctttgggtctctcatgtcacttgttggagcatttttaagtgttactgcttctattttgcttccatgtttgtgtta |
2723220 |
T |
|
| Q |
222 |
cttgaagatttttggaagctatagtaaatttgggtttgagacagtggcaattgtagtgataatattagtagctatagcaatgggaatttctggaacatat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2723221 |
cttgaagatttttggaagctatagtaaatttgggtttgagacagtgacaattgtagtgataatattagtagctatagcaatgggaatttctggaacatat |
2723320 |
T |
|
| Q |
322 |
atttcatttgtcgaaatagtacaaaatttgcaataggtaatgtattatgtagggcctaggatcatctcccgtatagttttcactggaggaggtccagtgt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2723321 |
atttcatttgtcgaaatagtacaaaatttgcaataggtaatgtattatgtagggcctaggatcatctcccgtatagttttcactggaggaggtccggtgt |
2723420 |
T |
|
| Q |
422 |
ccatctccaccattcaatatatttttcattaattgaaactgcacgtgtaagaaaaacgcgagggcttagactacacgtgagacaacttccatgcgagagg |
521 |
Q |
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| T |
2723421 |
ccatctccaccattcaatctatttttcattaattgaaactgcacgtgtaagaaaaacgcgagggcttagactacacatgagacaaattccatgggagagg |
2723520 |
T |
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| Q |
522 |
atctcctcccattatgttgtggaccattctctcgt |
556 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
2723521 |
atctcctcccgttatgttgtggaccattctctcgt |
2723555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 2695907 - 2695571
Alignment:
| Q |
22 |
acaccaattacaaattctttgaaagatttacttccaaggacatacaagaataatagagtgaccaatatgtttgtgagcactgtccttgtaatcagcactg |
121 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2695907 |
acaccaattacaaatgctttaaaagatttacttccaaggacatacaagaataatagagtgaccaatatgtttgtgagcactgtccttgtaatcagcactg |
2695808 |
T |
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| Q |
122 |
ttattgttgcattggctgttcctttctttgggtctctcatgccacttgttggagcatttttaagtgttactgcttctattttgcttccatgtttgtgtta |
221 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||| || | |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
2695807 |
ttattgttgcattggttgttcctttctttggatctctcatgtcattggttggagcatttttaagtgtcactgcttctattttgctaccatgtttgtgtta |
2695708 |
T |
|
| Q |
222 |
cttgaagatttttggaagctatagtaaatttgggtttgagacagtggcaattgtagtgataatattagtagctatagcaatgggaatttctggaacatat |
321 |
Q |
| |
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||||| ||||| |||||| |||| || |||| ||||||||||||| ||||||| || |||||||| |||||||||||| ||||||| ||||| |||||| |
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| T |
2695707 |
cttgaggatttctggaagttatatgaagtttgagtttgagacagtgacaattgtggtaataatatttgtagctatagcagtgggaatatctgggacatat |
2695608 |
T |
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| Q |
322 |
atttcatttgtcgaaatagtacaaaatttgcaatagg |
358 |
Q |
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| |||| |||| |||||||||||||||||| |||||| |
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| T |
2695607 |
acttcagttgttgaaatagtacaaaatttgtaatagg |
2695571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 373
Target Start/End: Complemental strand, 10837094 - 10836740
Alignment:
| Q |
22 |
acaccaattacaaattctttgaaagatttacttccaaggacatacaagaataatagagtgaccaatatgtttgtgagcactgtccttgtaatcagcactg |
121 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||| || |
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| T |
10837094 |
acaccaattacaaatgctttgaaagattttcttccaaggacatacaagaataatagagtgaccaatatcgttgtgagtactgttcttgtaattagcaatg |
10836995 |
T |
|
| Q |
122 |
ttattgttgcattggctgttcctttctttgggtctctcatgccacttgttggagcatttttaagtgttactgcttctattttgcttccatgtttgtgtta |
221 |
Q |
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|||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |
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| T |
10836994 |
ttattgttgcattgagtgttccattttttgggtctctcatggcacttgttggagcatttctaagtgtcactgcttctattttgcttccatgtttttgtta |
10836895 |
T |
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| Q |
222 |
cttgaagatttttggaagctatagtaaatttgggtttgagacagtggcaattgtagtgataatattagtagctatagcaatgggaatttctggaacatat |
321 |
Q |
| |
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||||||||||| |||||| ||||| | |||||||||||||||||||||||| || || ||||||||| ||| ||||| ||||||||| | ||| |||||| |
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| T |
10836894 |
cttgaagatttctggaagttataggacatttgggtttgagacagtggcaatagtggtaataatattaataggtatagtaatgggaatatatgggacatat |
10836795 |
T |
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| Q |
322 |
atttcatttgtcgaaatagtacaaaatttgcaatagg---taatgtattatgtag |
373 |
Q |
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| |||| |||| |||||| ||||||||||| |||||| ||||||||||||||| |
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| T |
10836794 |
acttcagttgttgaaatattacaaaatttgtaataggtactaatgtattatgtag |
10836740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 44252914 - 44252958
Alignment:
| Q |
423 |
catctccaccattcaatatatttttcattaattgaaactgcacgtg |
468 |
Q |
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| T |
44252914 |
catctccaccattcaatttatttttca-taattaaaactgcacgtg |
44252958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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