View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_low_6 (Length: 508)
Name: NF21257_low_6
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 178 - 488
Target Start/End: Complemental strand, 45616615 - 45616305
Alignment:
| Q |
178 |
aacttttcatagccaaatctcatgcgtttgctagccaaatactgcaaactcatttgcaacatggtactgacagtgttaattagtggttttaatgaacaag |
277 |
Q |
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| T |
45616615 |
aacttttcatagccaaatctcatgcgtttggtagccaaatactgcaaactcatttgcaacatggtactgacagtgttaattagtggttt-aatgaacaag |
45616517 |
T |
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| Q |
278 |
caagagctgaattaaacatcttatatagcacattgttgccaccatgttccaatgagtagagacaaaattacatcattttaaaacatgaaaacacatggtt |
377 |
Q |
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| T |
45616516 |
caagagctgaattaaacatcttatataacacattgttgccaccatgttccaatgagtagagacaaaattacatcatttt-aaacatgaaaacacatggtt |
45616418 |
T |
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| Q |
378 |
ataaatcaatcacgttgtatattcagagtctataacttgttcggttattcttagaaatccaaattaat--tagttggtgggtaaaggaatatttgatgca |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45616417 |
ataaatcaatcacgttgtatattcagagtctataacttgttctgttattcttagaaatccaaattaattatagttggtgggtaaaggaatatttgatgca |
45616318 |
T |
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| Q |
476 |
tgtgcaatgattg |
488 |
Q |
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| T |
45616317 |
tgtgcaatgattg |
45616305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 45617158 - 45617328
Alignment:
| Q |
18 |
tatctagtgttttgttgagtacgaaattcaacatctaatcatttacttcattttttggaaatctaataatttacttgtatatatagagtagttaatttaa |
117 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
45617158 |
tatctagtgttttgttgagtatgaaactcaacatctaatcatttacttcattttttggaaatctaataattaacttgtatatctagagtagttaatttaa |
45617257 |
T |
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| Q |
118 |
attttgaattaattttacctacaaaatattgatacccaacaaaaacttaagagtataaaaaacttttcata |
188 |
Q |
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| T |
45617258 |
attttgaattaattttacctacaaaatattgatacccaacaaaaacttaagagtataaaaaacttttcata |
45617328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 37533179 - 37533148
Alignment:
| Q |
111 |
aatttaaattttgaattaattttacctacaaa |
142 |
Q |
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| T |
37533179 |
aatttaaattttgaattaattttacctacaaa |
37533148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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