View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21258_high_11 (Length: 238)
Name: NF21258_high_11
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_high_11 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 18366368 - 18366151
Alignment:
| Q |
18 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgatttcatattcattccattctggtcctgagcctgctcttctcgata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18366368 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgattt---attcattccattctggtcctgagcctgctcttctcgatg |
18366272 |
T |
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| Q |
118 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaatgttatcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18366271 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaatgttatcac |
18366172 |
T |
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| Q |
218 |
tcatgattttcagatgtatat |
238 |
Q |
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||||||||||||||||||||| |
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| T |
18366171 |
tcatgattttcagatgtatat |
18366151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 18371632 - 18371415
Alignment:
| Q |
18 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgatttcatattcattccattctggtcctgagcctgctcttctcgata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18371632 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgattt---attcattccattctggtcctgagcctgctcttctcgatg |
18371536 |
T |
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| Q |
118 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaatgttatcac |
217 |
Q |
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| T |
18371535 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaatgttatcac |
18371436 |
T |
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| Q |
218 |
tcatgattttcagatgtatat |
238 |
Q |
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| T |
18371435 |
tcatgattttcagatgtatat |
18371415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 18375922 - 18375705
Alignment:
| Q |
18 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgatttcatattcattccattctggtcctgagcctgctcttctcgata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18375922 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgattt---attcattccattctggtcctgagcctgctcttctcgatg |
18375826 |
T |
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| Q |
118 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaatgttatcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18375825 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaatgttatcac |
18375726 |
T |
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| Q |
218 |
tcatgattttcagatgtatat |
238 |
Q |
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| T |
18375725 |
tcatgattttcagatgtatat |
18375705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 2976215 - 2976405
Alignment:
| Q |
18 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgatttcatattcattccattctggtcctgagcctgctcttctcgata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2976215 |
attttaaaccgggaaaatgttactaactctgtcgtcatggttcagccttcattgatttcatattcattccattctggtcctgagcctactcttctcgatg |
2976314 |
T |
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| Q |
118 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaa |
208 |
Q |
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| T |
2976315 |
tcgcagccattgcggctgacagggttctgcttttggatgcatttttcacagtcgttatttttcatggttcaaccattgcccaatggcgcaa |
2976405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 3022076 - 3022046
Alignment:
| Q |
208 |
atgttatcactcatgattttcagatgtatat |
238 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3022076 |
atgttatcactcatgattttcagatgtatat |
3022046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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