View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21258_high_5 (Length: 329)
Name: NF21258_high_5
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 28988353 - 28988029
Alignment:
| Q |
1 |
tcatcagccacaaaataacagggctcaaaatcagaacccggaagcatcattaacataatcaatgtacacaacctcagagaaaagaaagaagaaaaggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28988353 |
tcatcagccacaaaataacagggctcaaaatcagaacccagaagcatcattaacataatc---gtacacaacctcagagaaaagaaagaagaaaaggtat |
28988257 |
T |
|
| Q |
101 |
ttttcccccaccacactacaattatttaaagctccaaaattctaacttagactttactagctacgaagcagacaccgacacgacactgacacggatacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28988256 |
ttttcccccaccacactacaattatttaaagctccaaaattctaacttatactttactagctacgaagcagacaccgacacgacactgacacggatacgt |
28988157 |
T |
|
| Q |
201 |
cgacacaggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggatacaggaaacacctaatctaagaggtgtccgtgcttcagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28988156 |
cgacacaggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggacacaggaaacacctaatctaagaggtgtccgtgcttcagaa |
28988057 |
T |
|
| Q |
301 |
cttactagtaacaactcactacctatga |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28988056 |
cttactagtaacaactcactacctatga |
28988029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 44572683 - 44572654
Alignment:
| Q |
177 |
gacacgacactgacacggatacgtcgacac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44572683 |
gacacgacactgacacggatacgtcgacac |
44572654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University