View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21258_high_9 (Length: 249)
Name: NF21258_high_9
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 50036077 - 50035842
Alignment:
| Q |
13 |
aatatcaagtagtacactacatgttgattgaataaacaaccattttgatacttaatttgatacttgaatgcatcaaattattataatcaacaaatttgat |
112 |
Q |
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| T |
50036077 |
aatatcaagtagtacactacatgttgattgaataaacaaccattttgatacttaatttgatacttgaatgcatcaaattattataatcaacaaatttgat |
50035978 |
T |
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| Q |
113 |
ccttaatgtgcgaattccaactcacattttgtataggatattgaaaatctatattataaccaactagataaataaaattcgtgaacgttatttggtttca |
212 |
Q |
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| T |
50035977 |
ccttaatgtgtgaattccaactcacattttgtataggatattgaaaatctatattat-ataaactagataaataaaattcgtgaacgttatttggtttta |
50035879 |
T |
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| Q |
213 |
ataggatgttgaatatcaatttaaaactaagttcata |
249 |
Q |
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| T |
50035878 |
ataggatgctgaatatcaatttaaaactaagttcata |
50035842 |
T |
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