View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21258_low_1 (Length: 757)
Name: NF21258_low_1
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_low_1 |
 | |
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| [»] scaffold0003 (3 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 699; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Complemental strand, 24495324 - 24494598
Alignment:
| Q |
18 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
24495324 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataata |
24495225 |
T |
|
| Q |
118 |
ctagtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495224 |
ctagtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttg |
24495125 |
T |
|
| Q |
218 |
atgacgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctcacatgatctctg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24495124 |
atgacgttgcctagacagaggtttggtgaggcaatctgatagatgatctatagtggaaacatgttgaacccgaatctttttatttctcacatgatctctg |
24495025 |
T |
|
| Q |
318 |
acaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24495024 |
acaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccaagattgtcacagtagatggtaggaa |
24494925 |
T |
|
| Q |
418 |
tagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494924 |
tagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatga |
24494825 |
T |
|
| Q |
518 |
tcttgcaacggctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttcca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494824 |
tcttgcaacggctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttcca |
24494725 |
T |
|
| Q |
618 |
gcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24494724 |
gcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcaaagaagtcttt |
24494625 |
T |
|
| Q |
718 |
tcaaggatgtaaagtgtgtagatgatg |
744 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
24494624 |
tcaaggctgtaaagtgtgtagatgatg |
24494598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 24491766 - 24491623
Alignment:
| Q |
18 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
24491766 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataata |
24491667 |
T |
|
| Q |
118 |
ctagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24491666 |
ctagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24491623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 2810322 - 2810226
Alignment:
| Q |
18 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaata |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2810322 |
aattgcttcctagagctatggtttgactttctctaatcaattacagtgtgatattatttcttaatcacagaataactctcgtctaaaatgcttaata |
2810226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 2810071 - 2810031
Alignment:
| Q |
122 |
tatctcttaatttaaaagccttggtcctgtaaccttaacac |
162 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2810071 |
tatctcttaatttaaaagccttggtcttgtaaccttaacac |
2810031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 18556669 - 18557131
Alignment:
| Q |
18 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18556669 |
aattgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatacta |
18556768 |
T |
|
| Q |
118 |
ctagtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttg |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18556769 |
gaa-tatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcatatacgcctatcttgaaacgaagatcttg |
18556867 |
T |
|
| Q |
218 |
atgacgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctcacatgatctctg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18556868 |
atgacgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctgacatgatctctg |
18556967 |
T |
|
| Q |
318 |
acaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556968 |
acaaaatgaatatctatggcaatgtgcttcatgcgactatggaagaggggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaa |
18557067 |
T |
|
| Q |
418 |
tagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgc |
481 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18557068 |
tagtgggtaaactaacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc |
18557131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 130 - 570
Target Start/End: Complemental strand, 86677 - 86237
Alignment:
| Q |
130 |
aatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86677 |
aatttaaaagccttggtcctgtaaccttaacacgcccctgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
86578 |
T |
|
| Q |
230 |
agacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctcacatgatctctgacaaaatgaata |
329 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
86577 |
agacagaggtttggtgaggcaatctgttagctgatctgtagtggaaacatgttgaacccgaatctttttatttctgacatgatctctaacaaaatgaata |
86478 |
T |
|
| Q |
330 |
tctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaac |
429 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
86477 |
tctatggcagtatgcttcatgcgactatggaagacgggattgatagtgagatacgtggcaccgagattgtcacagtagatggtaggaatagttggtaaac |
86378 |
T |
|
| Q |
430 |
tgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggc |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
86377 |
tgacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggatgatcttgcaacaaa |
86278 |
T |
|
| Q |
530 |
tttttgtttaaaagacttccaagaaattgggttaccaccat |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86277 |
tttttgtttaaaagacttccaagaaattgggttaccaccat |
86237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 566 - 744
Target Start/End: Complemental strand, 94126 - 93948
Alignment:
| Q |
566 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
94126 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac |
94027 |
T |
|
| Q |
666 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatg |
744 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
94026 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatg |
93948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 86825 - 86693
Alignment:
| Q |
18 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
86825 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatacta |
86726 |
T |
|
| Q |
118 |
----ctagtatctcttaatttaaaagccttggt |
146 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
86725 |
gaatataatatcacttaatttaaaagccttggt |
86693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 24359079 - 24358936
Alignment:
| Q |
18 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24359079 |
aattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataata |
24358980 |
T |
|
| Q |
118 |
ctagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24358979 |
ctagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24358936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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