View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21258_low_11 (Length: 241)
Name: NF21258_low_11
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_low_11 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 93519 - 93750
Alignment:
| Q |
10 |
catcatcattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaaccatgcaattgctaa |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93519 |
catcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaaccatgcaattgctaa |
93618 |
T |
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| Q |
110 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93619 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
93718 |
T |
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| Q |
210 |
ctgagtcaacataaatatattcatgatctact |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
93719 |
ctgagtcaacataaatatattcatgatctact |
93750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 24494169 - 24494400
Alignment:
| Q |
10 |
catcatcattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaaccatgcaattgctaa |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24494169 |
catcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattactggcaacaacaaccatgcaattgctaa |
24494268 |
T |
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| Q |
110 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494269 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
24494368 |
T |
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| Q |
210 |
ctgagtcaacataaatatattcatgatctact |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24494369 |
ctgagtcaacataaatatattcatgatctact |
24494400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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