View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21258_low_13 (Length: 227)
Name: NF21258_low_13
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 50035822 - 50035609
Alignment:
| Q |
1 |
tctaaattaaagcaaataaatttaaatttttactacaagtttgactaaaaaatgatcgttggaatggtcaatcacaatgtcgtagttacaaagtacaaac |
100 |
Q |
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| T |
50035822 |
tctaaattaaagcaaataaatttaaatttttactacaagtttgactaaaaaattatcattggaatggtcaaccacaatgccgtcgttacaaagtacaaac |
50035723 |
T |
|
| Q |
101 |
tctaattcatacacgttgtatatcaattttacaaaatccatttaatttaaaactaaatttcgtttggtaaatttactttcttgtgtcaaaaagttttgtt |
200 |
Q |
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| T |
50035722 |
tctaattcatacatgttgtatatcaattttacaaaatttatttaatttaaaactaaatttcgtttggtaaatttactttcttgtgtc-aaaagttttgtt |
50035624 |
T |
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| Q |
201 |
aacaaaataaatata |
215 |
Q |
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||||||||||||||| |
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| T |
50035623 |
aacaaaataaatata |
50035609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18672427 - 18672382
Alignment:
| Q |
1 |
tctaaattaaagcaaataaatttaaatttttactacaagtttgact |
46 |
Q |
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||||||||||| ||||||||||||||| ||| ||||||||||||| |
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| T |
18672427 |
tctaaattaaactaaataaatttaaattcttagtacaagtttgact |
18672382 |
T |
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