View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21258_low_14 (Length: 218)

Name: NF21258_low_14
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21258_low_14
NF21258_low_14
[»] chr2 (3 HSPs)
chr2 (1-96)||(44565117-44565212)
chr2 (15-95)||(36035895-36035975)
chr2 (165-202)||(44565011-44565048)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 44565212 - 44565117
Alignment:
Q  1 atagtgtgcaggagtgtagtcactccagacactaagagcacagtacataccattgctgcagtttcatcctatagccaccaacacatcagataacag 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44565212 atagtgtgcaggagtgtagtcactccagacactaagagcacagtacataccattgctgcagtttcatcctatagccaccaacacatcagataacag 44565117  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 36035895 - 36035975
Alignment:
Q  15 tgtagtcactccagacactaagagcacagtacataccattgctgcagtttcatcctatagccaccaacacatcagataaca 95  Q
    |||||||||||||||||| |||||||||||  |||||| ||| ||| |||| |||||||||||| ||||||||||||||||    
T  36035895 tgtagtcactccagacacaaagagcacagttgataccactgcagcaatttcctcctatagccactaacacatcagataaca 36035975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 44565048 - 44565011
Alignment:
Q  165 gactactcacatgagaagctcccatagcaggagctatg 202  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44565048 gactactcacatgagaagctcccatagcaggagctatg 44565011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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