View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21258_low_6 (Length: 320)
Name: NF21258_low_6
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 40515931 - 40516219
Alignment:
| Q |
19 |
ataaatgaccttaataaatagcaagacaatggaatggggccaaaagggaaagnnnnnnngaaggggaaaatgcatctctctctgtactcactgtaataat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40515931 |
ataaatgaccttaataaatagcaagacaatggaatggggccaaaaggaaaagaaaaaaagaaggggaaaatgcatctctctctgtactcactttaataat |
40516030 |
T |
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| Q |
119 |
ataaacaataataattaatctgtatcataagcagcaacaaaagcctgaacactgttattttttagtagtttcttatatgtgaatagtaaaaagttgatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40516031 |
ataaacaataataattaatctgtatcataagcagcaacaaaagcctgaacactgttattttttagt---ttcttatatgtgaatagtaaaaagttgatta |
40516127 |
T |
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| Q |
219 |
ttctagcagccccagccccacatataaccctttctctataaaatagctgacctatcaaatccgtactaagttactgtcttaccctatctctg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40516128 |
ttctagcagccccagccccacatataaccctttctctataaaatagctgacctatcaaatccgtactaagttactgtcttatcctatctctg |
40516219 |
T |
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