View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21258_low_7 (Length: 314)
Name: NF21258_low_7
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 30170121 - 30170427
Alignment:
| Q |
1 |
cccccgcctctccttgtcgatgttggtgtagtaggcgtatctgactgcaa------cattgataacatattgcatttgattaaagacttttctgctgata |
94 |
Q |
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||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||| |||||| |
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| T |
30170121 |
cccccgcctctgcctgtcaatgttggtgttgtaggcgtatctgactgcaattttaacattcataacatatagcatttgattaaaggcttttccactgata |
30170220 |
T |
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| Q |
95 |
attaatcaaccatataactttgtatttaaaacttagttacctcaatgatgttgaccttattaatagtgtattcaattcaaatttgaataaaatcacaaaa |
194 |
Q |
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| T |
30170221 |
actaatcaaccatataactttgtatttaaaggttagttacctcaatgatgtggaccttatcgatagtatattcaattcaaagttgaataaaatcacacaa |
30170320 |
T |
|
| Q |
195 |
cttaaactccaaattcaggaaaatatcacggcaaacattaaattagtggttcatagaatagacctgttagatacctgtgaaaactcctcttgaacagcca |
294 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30170321 |
cttaaactccaaattcaggaaaataatacggcaaacattaaattagaggtacatagaatagacgtgttagatacctgtgaaaactcctcttgaacagcca |
30170420 |
T |
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| Q |
295 |
taggttc |
301 |
Q |
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|||||| |
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| T |
30170421 |
caggttc |
30170427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 147 - 310
Target Start/End: Original strand, 30144203 - 30144366
Alignment:
| Q |
147 |
gaccttattaatagtgtattcaattcaaatttgaataaaatcacaaaacttaaactccaaattcaggaaaatatcacggcaaacattaaattagtggttc |
246 |
Q |
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| T |
30144203 |
gaccttattaatagtttattcaattcaaatttgaataaaatcacaaaacttaaactctaaattcaggaaaatatcatggcaaacattaaattagaggtac |
30144302 |
T |
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| Q |
247 |
atagaatagacctgttagatacctgtgaaaactcctcttgaacagccataggttcatctctctc |
310 |
Q |
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| T |
30144303 |
atagaatagacctgttagatacctgtgaaaactcctcttgaacagccacaggttcttctatctc |
30144366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 154 - 301
Target Start/End: Original strand, 30172060 - 30172207
Alignment:
| Q |
154 |
ttaatagtgtattcaattcaaatttgaataaaatcacaaaacttaaactccaaattcaggaaaatatcacggcaaacattaaattagtggttcatagaat |
253 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |
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| T |
30172060 |
ttaattgtttattcaattcaaatttgaataaaatcacaaaacttaaactccaaattcaggaaaatattacggcaaacattaaattagaggtacatagaat |
30172159 |
T |
|
| Q |
254 |
agacctgttagatacctgtgaaaactcctcttgaacagccataggttc |
301 |
Q |
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| T |
30172160 |
agacctgttagatacctgtgaaaaatcctcttgaacagccacaggttc |
30172207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 154 - 301
Target Start/End: Original strand, 30187601 - 30187746
Alignment:
| Q |
154 |
ttaatagtgtattcaattcaaatttgaataaaatcacaaaacttaaactccaaattcaggaaaatatcacggcaaacattaaattagtggttcatagaat |
253 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||| |||||||| |
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| T |
30187601 |
ttaattgtttattcaattcaaatttgaataaaatcacaaaacttaaactccaaattcaggaaaatattacggaaaacat--aattagaggtacatagaat |
30187698 |
T |
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| Q |
254 |
agacctgttagatacctgtgaaaactcctcttgaacagccataggttc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30187699 |
agacctgttagatacctgtgaaaactcctcttgaacagccacaggttc |
30187746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 30169190 - 30169354
Alignment:
| Q |
55 |
gataacatattgcatttgattaaagacttttctgctgataattaatcaa--ccatataactttgtatttaaaacttagttacctcaatgatgttgacctt |
152 |
Q |
| |
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|||||||||| |||| || | ||| |||||| ||||||||||||||| ||||||||||| || ||||||| |||||||| |||||| | |||||| |
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| T |
30169190 |
gataacatataacattcgaattaaggcttttcaactgataattaatcaatgccatataacttggtgtttaaaatttagttactctaatgatatggacctt |
30169289 |
T |
|
| Q |
153 |
attaatagtgtattcaattcaaatttgaataaaatcacaaaacttaaactccaaattcaggaaaa |
217 |
Q |
| |
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|||||| || ||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||| |
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| T |
30169290 |
attaattgtttattcaattcaaagttggataaaatcacaaaacttaacctcaaaattcaggaaaa |
30169354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 30171768 - 30171872
Alignment:
| Q |
58 |
aacatattgcatttgattaaagacttttctgctgataattaatcaaccatat----aactttgtatttaaaacttagttacctcaatgatgttgacctta |
153 |
Q |
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||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
30171768 |
aacatatagcatttgattaaaggcttttccactgataattaatcaaccatatatataactttgtatttaaaatttagttacctcaatgatgtggacctta |
30171867 |
T |
|
| Q |
154 |
ttaat |
158 |
Q |
| |
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||||| |
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| T |
30171868 |
ttaat |
30171872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 30187309 - 30187413
Alignment:
| Q |
58 |
aacatattgcatttgattaaagacttttctgctgataattaatcaaccatat----aactttgtatttaaaacttagttacctcaatgatgttgacctta |
153 |
Q |
| |
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||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
30187309 |
aacatatagcatttgattaaaggcttttccactgataattaatcaaccatatatataactttgtatttaaaatttagttacctcaatgatgtggacctta |
30187408 |
T |
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| Q |
154 |
ttaat |
158 |
Q |
| |
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||||| |
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| T |
30187409 |
ttaat |
30187413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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