View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21258_low_8 (Length: 275)
Name: NF21258_low_8
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 50 - 275
Target Start/End: Original strand, 18594327 - 18594558
Alignment:
| Q |
50 |
cctccactctcttctccccgccctcgatagcaaattgaaactattcatcttgtctcccttatatttaactcctatcgccttaccaattccccaaacatct |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
18594327 |
cctccactctcttctccccgccctcgatagcaaattgaaactattcatcttgtctcccttatatttaactcctatcaccttaccaattccccacacatct |
18594426 |
T |
|
| Q |
150 |
tcgacggaagcttcgactttaccatgtaatagaacccaattctgcc------gttttactgaagaactataattattggaagactcggaataattcttta |
243 |
Q |
| |
|
|| ||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18594427 |
tcaacggaagcttcaactttacgatgtaatagaacccaattatgccaatcttgttttactgaagaacaataattattggaagactatgaataattcttta |
18594526 |
T |
|
| Q |
244 |
cctctacatgagaagaatgagatgaactacga |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18594527 |
cctctacatgagaagaatgagatgaactacga |
18594558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 5943888 - 5943992
Alignment:
| Q |
47 |
tgccctccactctcttctccccgccctcgatagcaaattgaaactattcatcttgtctcccttatatttaactcctatcgccttaccaattccccaaaca |
146 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| || |||||||| || ||||||||||||||||||||||||| ||| | ||| ||||| || |
|
|
| T |
5943888 |
tgccctccactcttttatccccaatctcgaaagcaaattaaacctattcattttatctcccttatatttaactcctatcgacttgcaaatgccccacact |
5943987 |
T |
|
| Q |
147 |
tcttc |
151 |
Q |
| |
|
||||| |
|
|
| T |
5943988 |
tcttc |
5943992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University