View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21258_low_9 (Length: 264)
Name: NF21258_low_9
Description: NF21258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21258_low_9 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 24494377 - 24494617
Alignment:
| Q |
20 |
acataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494377 |
acataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgat |
24494476 |
T |
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| Q |
120 |
ggcgcaagtgcagcagatagtacggaatacagaagcgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagc |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24494477 |
ggcgcaagtgtagcagatagtacggaatacagaagcgtcataggggctctacaatatttttccatgacaaggcctgacatagcctacactgtaaataagc |
24494576 |
T |
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| Q |
220 |
ttgcacaattcatgcaacatccatcatctacacactttaca |
260 |
Q |
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| T |
24494577 |
ttgcacaattcatgcaacatccatcatctacacactttaca |
24494617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 93727 - 93967
Alignment:
| Q |
20 |
acataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93727 |
acataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgat |
93826 |
T |
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| Q |
120 |
ggcgcaagtgcagcagatagtacggaatacagaagcgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagc |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
93827 |
ggcgcaagtgaagcagatagtacggaatacagaagcgtcataggggctctacaatatttgtccatgacaaggcctgacatagcctacactgtaaataagt |
93926 |
T |
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| Q |
220 |
ttgcacaattcatgcaacatccatcatctacacactttaca |
260 |
Q |
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| T |
93927 |
ttgcacagttcatgcaatatccatcatctacacactttaca |
93967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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