View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21259_high_1 (Length: 509)
Name: NF21259_high_1
Description: NF21259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21259_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 61 - 495
Target Start/End: Original strand, 35278807 - 35279241
Alignment:
| Q |
61 |
tgaatagatttgattatttagcactgtgaaaccaagaaccatgaattaacattaattgaaccatcatatataacctgactctgacttgaggatcctagag |
160 |
Q |
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| T |
35278807 |
tgaatagatttgattatttagcactgtgaaaccaagaaccatgaattaacattaattgaaccatcatatataacctgactctgacttgaggatcctagag |
35278906 |
T |
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| Q |
161 |
tgagttgagtctgttgccttctactccaaatgtcggacaagattccacgtgggtgttgatcgaattctaaaaattcagttaaataatcagtcaaagtaat |
260 |
Q |
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| T |
35278907 |
tgagttgagtctgttgccttatactccaaatgtcggacaagattccacgtgggtgttgatcgaattctaaaaattcagttaaataatcagtcaaagaaat |
35279006 |
T |
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| Q |
261 |
gaatgatattagaagaaagaaaagaatatgcagaagatctgaatatgtatccgttgttatcaccatcaccctttgcaaaacataatcatacaagcttaag |
360 |
Q |
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| T |
35279007 |
gaatgatattagaagaaagaaaagaatatgcagaagatctgaatatgtatccgttgttatcaccatcaccctttgcaaaacataatcatacaagcttaag |
35279106 |
T |
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| Q |
361 |
aatctatattataagctgcatttgcgcttcaactacatttgtctgcattttgttgcaatatcaagattctcagaaagtgcaaaagtagacatatatacat |
460 |
Q |
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| T |
35279107 |
aatctatattataagctggatttgcgcttcaactacatttgtctgcattttgttgcaatatcaagattcgcagaaagtgcaaaagtagacatatatacat |
35279206 |
T |
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| Q |
461 |
acataccagggggaattgatccagtaatgtgagct |
495 |
Q |
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| T |
35279207 |
acataccagggggaattgatccagtaatgtgagct |
35279241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 35278536 - 35278488
Alignment:
| Q |
18 |
tcagatggaaagattgtagcaagcggtgggaacagcgggaaggtgaata |
66 |
Q |
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| T |
35278536 |
tcagatggaaagattgtagcaagcggtgggaacagcgggaaggtgaata |
35278488 |
T |
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