View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21259_low_3 (Length: 334)
Name: NF21259_low_3
Description: NF21259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21259_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 41510532 - 41510834
Alignment:
| Q |
16 |
ctggccttcaaatcaaaattgtaaccctaattttttcatcaaaacaagttggattaccagatggttgcgagaatttcgacatggtgaacattccaaaaga |
115 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
41510532 |
ctggccttcaaatcaaaattgtaaccctaaattttccatcaaaacaagttggattaccagacggttgcgagaatttcgacatggtgaacatttcaaaaga |
41510631 |
T |
|
| Q |
116 |
catgaatatgatgtacaatctattccatgcagtttccttgcttcaaaaggaaggtgaagatttgtttgataaattgtcaccaaaa-ccaagttgcattat |
214 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41510632 |
catgaatatgaagtacaatctattccatgcagtttccttgcttcaaaaggaaggtgaagatttgtttgataaattgtcaccaaaacccaagttgcattat |
41510731 |
T |
|
| Q |
215 |
ctctgatttttgcataacttggacttctcaaatagctgaaaaacatcacattccaaggatttcattccatggtttttgttgtttcaccctccattgcatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41510732 |
ctctgatttttgcataacttggacttctcaaatagctgaaaaacatcacattccaaggatttcattccatggtttttgttgtttcaccctccattgcatg |
41510831 |
T |
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| Q |
315 |
ttc |
317 |
Q |
| |
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||| |
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| T |
41510832 |
ttc |
41510834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 160 - 317
Target Start/End: Original strand, 41520349 - 41520506
Alignment:
| Q |
160 |
aaaaggaaggtgaagatttgtttgataaattgtcaccaaaaccaagttgcattatctctgatttttgcataacttggacttctcaaatagctgaaaaaca |
259 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41520349 |
aaaaggaaggtgaagatttgtttgataaattgtcgccaaaaccaagttgcattatctctgatttttgcataacttggacttctcaaatagctgagaaaca |
41520448 |
T |
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| Q |
260 |
tcacattccaaggatttcattccatggtttttgttgtttcaccctccattgcatgttc |
317 |
Q |
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| T |
41520449 |
tcacattccaaggatttcattccatggtttttgttgtttcaccctccattgcatgttc |
41520506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 41520228 - 41520349
Alignment:
| Q |
16 |
ctggccttcaaatcaaaattgtaaccctaattttttcatcaaaacaagttggattaccagatggttgcgagaatttcgacatggtgaacattccaaaaga |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41520228 |
ctggccttcaaatcaaaattgtaaccctaaatttttcatcaaaacaagttggattaccagatggttgcgagaatttcgacatggtgaacatttcaaaaga |
41520327 |
T |
|
| Q |
116 |
catgaatatgatgtacaatcta |
137 |
Q |
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|||||||||||||||||||||| |
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| T |
41520328 |
catgaatatgatgtacaatcta |
41520349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 48531899 - 48532188
Alignment:
| Q |
16 |
ctggccttcaaatcaaaattgtaaccctaattttttcatcaaaacaagttggattaccagatggttgcgagaatttcgacatggtgaacattccaaaaga |
115 |
Q |
| |
|
||||||| ||||||||||| ||||| || | |||| || ||||||||| || |||||||| || || |||||||| ||||||||| | | ||| ||| |
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| T |
48531899 |
ctggcctccaaatcaaaatagtaacactcaattttccaacaaaacaagcagggttaccagaagggtgtgagaattttgacatggtgga---ttcaataga |
48531995 |
T |
|
| Q |
116 |
catgaatatgatgtacaatctattccatgcagtttccttgcttcaaaaggaaggtgaagatttgtttgataaattgtcaccaaaaccaagttgcattatc |
215 |
Q |
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||||| |||| |||| ||||||||| | ||||||| ||||| || |||||| ||||||||| |||| ||||||||||||||||||| ||| |
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| T |
48531996 |
catgagaatga------atctcttccatgcaatcaccttgctccaaaaaccagctgaagaattgtttgatgcattgacaccaaaaccaagttgcataatc |
48532089 |
T |
|
| Q |
216 |
tctgatttttgcataacttggacttctcaaatagctgaaaaacatcacattccaaggatttcattccatggtttttgttgtttcaccctccattgcatg |
314 |
Q |
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|||||||||| ||| |||||||| ||||||||||||||| ||| | ||||||||||||||||||||||| |||| ||| ||| |||||||||||| |
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| T |
48532090 |
tctgattttttcattccttggactattcaaatagctgaaaaccataaaattccaaggatttcattccatgggttttcttgcttctgtctccattgcatg |
48532188 |
T |
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