View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21259_low_4 (Length: 269)

Name: NF21259_low_4
Description: NF21259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21259_low_4
NF21259_low_4
[»] chr8 (2 HSPs)
chr8 (100-246)||(39310111-39310257)
chr8 (5-64)||(39310292-39310351)
[»] chr7 (2 HSPs)
chr7 (100-246)||(43831405-43831565)
chr7 (5-64)||(43831595-43831654)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 39310257 - 39310111
Alignment:
Q  100 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtgnnnnnnncataatagaaaaatgagaggaagaagaaca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||    
T  39310257 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtgaaaaaaccagaatagaaaaatgagaggaagaagaaca 39310158  T
Q  200 acttcccaaaaccaactactacaatccatttcccatctacaccgcat 246  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  39310157 acttcccaaaaccaactactacattccatttcccatctacaccgcat 39310111  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 39310351 - 39310292
Alignment:
Q  5 atgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39310351 atgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 39310292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 43831565 - 43831405
Alignment:
Q  100 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtgnnnnnnn--------------cataatagaaaaatga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     || |||||||||||||    
T  43831565 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtgaaaaaaggaagaagaaaaaaccagaatagaaaaatga 43831466  T
Q  186 gaggaagaagaacaacttcccaaaaccaactactacaatccatttcccatctacaccgcat 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43831465 gaggaagaagaacaacttcccaaaaccaactactacaatccatttcccatctacaccgcat 43831405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 43831654 - 43831595
Alignment:
Q  5 atgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43831654 atgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 43831595  T

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