View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21259_low_7 (Length: 223)
Name: NF21259_low_7
Description: NF21259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21259_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34772304 - 34772084
Alignment:
| Q |
1 |
tagaaagtctgcaatacatttctttcatgtctccggatgtcgtacctagagcatcccatccatgaagtcttgcttcaaagcaatttcttgctccacggtc |
100 |
Q |
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| T |
34772304 |
tagaaagtctgcaatacatttctttcatgtctccggatgtcgtacctagagcatcccatccatgaagtcttgcttcaaagcaatttcttgctccacggtc |
34772205 |
T |
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| Q |
101 |
cctccaaactaacttttcatcttcactcatagcttcccacaaatctaaagaaacttcaaacctcattctattcttcttcaactcagccaacctaaaatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34772204 |
cctccaaactaacttttcatcttcactcatagcttcccacaaatctaaagaaacttcaaacctcattctattcttcttcaactcatccaacctaaaatag |
34772105 |
T |
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| Q |
201 |
agagagaagaaataaaaataa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34772104 |
agagagaagaaataaaaataa |
34772084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9531856 - 9531926
Alignment:
| Q |
1 |
tagaaagtctgcaatacatttctttcatgtctccggatgtcgtacctagagcatcccatccatgaagtcttg |
72 |
Q |
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||||||| |||||||||||||||||||| ||| | |||||| |||||| |||||||||||||| |||||| |
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| T |
9531856 |
tagaaagcctgcaatacatttctttcatctct-ctgatgtccatcctagaacatcccatccatgacgtcttg |
9531926 |
T |
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