View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_high_1 (Length: 856)

Name: NF2125_high_1
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_high_1
NF2125_high_1
[»] chr3 (2 HSPs)
chr3 (18-446)||(53325164-53325592)
chr3 (649-844)||(53324287-53324485)
[»] chr1 (5 HSPs)
chr1 (18-446)||(14122267-14122694)
chr1 (465-839)||(14123917-14124289)
chr1 (196-286)||(41698399-41698489)
chr1 (196-286)||(41703993-41704083)
chr1 (196-241)||(40248556-40248601)
[»] chr7 (3 HSPs)
chr7 (18-439)||(35048593-35049012)
chr7 (18-442)||(15635878-15636285)
chr7 (465-838)||(35050957-35051329)
[»] chr4 (4 HSPs)
chr4 (18-446)||(20007672-20008101)
chr4 (465-839)||(20006076-20006449)
chr4 (18-249)||(49622348-49622579)
chr4 (196-286)||(54078461-54078551)
[»] chr2 (1 HSPs)
chr2 (115-323)||(1177850-1178055)
[»] chr5 (2 HSPs)
chr5 (214-315)||(9284809-9284910)
chr5 (247-286)||(23556713-23556752)
[»] chr8 (1 HSPs)
chr8 (132-260)||(7494890-7495015)
[»] chr6 (1 HSPs)
chr6 (524-570)||(8532270-8532316)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 53325592 - 53325164
Alignment:
Q  18 agttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcatt-agtggagacgggat 116  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  53325592 agttagatatatagaaatcatgttatatccacttgttaatttagttgattaatttaagtttgtgttttgtaaaattttctgtatttagtggagacgggat 53325493  T
Q  117 ctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53325492 ctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgataaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattgg 53325393  T
Q  217 gatgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaatatgcaaag 316  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53325392 gatgacatttaattctgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaaaatgcaaag 53325293  T
Q  317 gatggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagtaactcaaagaaccttttgaaaccaaatcccatcacaagagcaca 416  Q
    |||||||         ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||    
T  53325292 gatggaa-aaaaaatactttactctaggatgtacttgtgcaagaagctatgtgagtaactcaaagaaccttttgagaccaaatcctaccataagagcaca 53325194  T
Q  417 atgtatggctagagtaaatatgtgtcagtc 446  Q
    |||||| |||||||||||||||||||||||    
T  53325193 atgtatagctagagtaaatatgtgtcagtc 53325164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 649 - 844
Target Start/End: Complemental strand, 53324485 - 53324287
Alignment:
Q  649 atatttgtttaacaggtcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttc------cnnnnnnncttt 742  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||      |       || |    
T  53324485 atatttgtttaacaggttccatattattctcaaagcataaatcataatattacatgttcagaacttttagaggtattggttcctttttctctctctctct 53324386  T
Q  743 ctcctactgatatagtcaagatttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatcatgat 842  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||| ||    
T  53324385 ctcctactgatatagtcaagatgtaatataaatcaccaattcttacatttgtgt---tttttgtaggcacaacaccatatgattgataaaccatcataat 53324289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 14122267 - 14122694
Alignment:
Q  18 agttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcattagtggagacgggatc 117  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14122267 agttagatatatagaaatcatgttatatccacttgttaatttagttgattagtttaagtttgtgttttgtaaaattttctgcattagtggagacgggatc 14122366  T
Q  118 tacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattggg 217  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14122367 tacttcttctgtccaagaggaggttgatcacctaaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaatctaggattggg 14122466  T
Q  218 atgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaatatgcaaagg 317  Q
    |||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14122467 atgacatttaattctgaagaagaagttaccaaatattataagagctatgctagatgtatgggttttggaactgttaaaatcaattcaaaaaatgcaaagg 14122566  T
Q  318 atggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagtaactcaaagaaccttttgaaaccaaatcccatcacaagagcacaa 417  Q
    ||||||         ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  14122567 atggaa-aaaaaatactttactctaggatgtacttgtgcaagaagctatgtgagtaacacaaagaaccttttgaaaccaaatcctatcataagagcacaa 14122665  T
Q  418 tgtatggctagagtaaatatgtgtcagtc 446  Q
    |||||||||||||||||||||||||||||    
T  14122666 tgtatggctagagtaaatatgtgtcagtc 14122694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 465 - 839
Target Start/End: Original strand, 14123917 - 14124289
Alignment:
Q  465 ctgagttttctacatctcagatcattgatgggattggcacacaagagagaatttaagcaaatttagctcccttcaatcgaaatcaaaaatattttgttga 564  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  14123917 ctgagttttctacatctcagatcattgatgggattgacacacaatagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttga 14124016  T
Q  565 agtaaatcaggtccaaataaataaaagcactctttacttttggttgaacatttatattcatattatggaagtttttgattcagtatatttgtttaacagg 664  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  14124017 agtaaatcaggtccaaataaataaaagtactctttactttttgttgaacatttatattcatattatggaagtttctgattcaatatatttgtttaacagg 14124116  T
Q  665 tcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttccnnnnnnnctttctcctactgatatagtcaagat 764  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  14124117 tcccatattattctgaaagcataaatcataatattacatgttcataacttttaaaggtattggttcctttttttctttctcctactgatatagtcaagat 14124216  T
Q  765 ttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatcat 839  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  14124217 ttaatataaatcaccaattcttacatttatgtg--tttttgtaggcacaacaccatatgattgataaaccatcat 14124289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 41698399 - 41698489
Alignment:
Q  196 agatgaagaacctaggattgggatgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttgga 286  Q
    |||||| ||||||| | |||| |||| ||||| || |  ||||||| ||  |||||||||||||| ||||||||||||||| |||||||||    
T  41698399 agatgatgaacctaaggttggcatgaaatttaattctacagaagaagttgacaaatattacaagaattatgctagatgtataggttttgga 41698489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 41703993 - 41704083
Alignment:
Q  196 agatgaagaacctaggattgggatgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttgga 286  Q
    |||||| ||||||| | |||| |||| ||||| || |  ||||||| ||  |||||||||||||| ||||||||||||||| |||||||||    
T  41703993 agatgatgaacctaaggttggcatgaaatttaattctacagaagaagttgacaaatattacaagaattatgctagatgtataggttttgga 41704083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 40248556 - 40248601
Alignment:
Q  196 agatgaagaacctaggattgggatgacatttagttttgaagaagaa 241  Q
    ||||||||||||||| | ||||||||||||||| | ||||||||||    
T  40248556 agatgaagaacctagaactgggatgacatttaggtctgaagaagaa 40248601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 35048593 - 35049012
Alignment:
Q  18 agttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcattagtggagacgggatc 117  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  35048593 agttagatatttagaaatcatgttatatccacttgttaatttagttgattgatttaagtttgtgttttgtaaaatttgctgcattagtggaaacgggatc 35048692  T
Q  118 tacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattggg 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35048693 tacttcttctgtccaagaggaggttgatcacataaatgaaaacagtgatgaaaatttagaagcaaatattgttcaagcagatgaggaacctaggattggg 35048792  T
Q  218 atgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaatatgcaaagg 317  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35048793 atgacatttagttctgaagaagaagttatcaaatattacaagagctatgctagatgtatgggttttggaactgttaaaatcaattcaaaaaatgcaaagg 35048892  T
Q  318 atggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagtaactcaaagaaccttttgaaaccaaatcccatcacaagagcacaa 417  Q
    ||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||     
T  35048893 atggaa--aaaaatactttactctaggatgtactcgtgcaagaagctatgtgagtaactcaaagaaccttttgaaaccaaatcctaccataagagcacag 35048990  T
Q  418 tgtatggctagagtaaatatgt 439  Q
    ||||||||||||||||||||||    
T  35048991 tgtatggctagagtaaatatgt 35049012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 15636285 - 15635878
Alignment:
Q  18 agttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgca-ttagtggagacgggat 116  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15636285 agttagatatatagaaatcatgttatatccacttgttaatttagttgattgatttaagtttgtgttttgtaaaattttctgcatttagtggagacgggat 15636186  T
Q  117 ctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattgg 216  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  15636185 ctacttcttctgtccaagaggagg---------taaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagc--------aacctaggattgg 15636103  T
Q  217 gatgacatttagttttgaagaagaaattaccaaata-ttacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaatatgcaaa 315  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  15636102 gatgacatttagttatgaagaagaaattaccaaatatttacaagagttatgctagatgtatgggttttggaactgttaaaatcaattaaaaaaatgcaaa 15636003  T
Q  316 ggatggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagtaactcaaagaaccttttgaaaccaaatcccatcacaagagcac 415  Q
    ||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||||    
T  15636002 ggatggaa--aaaaatactttactctaggatgtactcgtgcaagaagctatgtgagtaactcaaagaaccttttgaaaccaaaccctaccataagagcac 15635905  T
Q  416 aatgtatggctagagtaaatatgtgtc 442  Q
    ||||||||||||||||||| |||||||    
T  15635904 aatgtatggctagagtaaacatgtgtc 15635878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 465 - 838
Target Start/End: Original strand, 35050957 - 35051329
Alignment:
Q  465 ctgagttttctacatctcagatcattgatgggattggcacacaagagagaatttaagcaaatttagctcccttcaatcgaaatcaaaaatattttgttga 564  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  35050957 ctgagttttctacatctcaaatcattgatgggattggcacacaacagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttga 35051056  T
Q  565 agtaaatcaggtccaaataaataaaagcactctttacttttggttgaacatttatattcatattatggaagtttttgattcagtatatttgtttaacagg 664  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||| ||||  |||||||||||    
T  35051057 agtaaatcaggtccaaataaattcaagcactctttacttttgtttgaacatttctattcatattatggaagtatctgattcaatataaatgtttaacagg 35051156  T
Q  665 tcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttccnnnnnnnctttctcctactgatatagtcaagat 764  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||       ||||||  || |||| |||||||| |    
T  35051157 tcccatactattctcaaagcataaatcataatattacatgttcagaacttttagaggtatcggttccttcttttctttctgttagtgatctagtcaagtt 35051256  T
Q  765 ttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatca 838  Q
    ||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  35051257 ttaatataaatcagcaattcttacatttatgtg-ttttttgtaggcacaacaccatatgattgataaaccatca 35051329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 20008101 - 20007672
Alignment:
Q  18 agttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcattagtggagacgggatc 117  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20008101 agttagatatatagaaatcatgttatatccacttgttaatttagttgattagtttaagtttgtgttttgtaaaattttctgcattagtggagacgggatc 20008002  T
Q  118 tacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattggg 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  20008001 tacttcttctgtccaagaggaggttgatcacctaaatgaaaatagtgattaaaatttagaagcaaatattgttcaagcaaatgaagaatctaggattggg 20007902  T
Q  218 atgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaatatgcaaagg 317  Q
    |||||||||| || |||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20007901 atgacatttaattatgaagaagaagttaccagatattataagagctatgctagatgtatgggttttggaactgttaaaatcaattcaaaaaatgcaaagg 20007802  T
Q  318 atgg-aagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagtaactcaaagaaccttttgaaaccaaatcccatcacaagagcaca 416  Q
    |||| ||         ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||    
T  20007801 atggaaaaaaaaaatactttactctaggatgtacttgtgcaagaagctatgtgagtaacacaaagaaccttttgaaaccaaatcctatcataagagcaca 20007702  T
Q  417 atgtatggctagagtaaatatgtgtcagtc 446  Q
    ||||||||||||||||||||||||||||||    
T  20007701 atgtatggctagagtaaatatgtgtcagtc 20007672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 465 - 839
Target Start/End: Complemental strand, 20006449 - 20006076
Alignment:
Q  465 ctgagttttctacatctcagatcattgatgggattggcacacaagagagaatttaagcaaatttagctcccttcaatcgaaatcaaaaatattttgttga 564  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  20006449 ctgagttttctacatctcagatcattgatgggattgacacacaatagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttga 20006350  T
Q  565 agtaaatcaggtccaaataaataaaagcactctttacttttggttgaacatttatattcatattatggaagtttttgattcagtatatttgtttaacagg 664  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  20006349 agtaaatcaggtccaaataaataaaagtactctttacttttggttgaacatttatattcatattatggaagtttctgattcaatatatttgtttaacagg 20006250  T
Q  665 tcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttccnnnnnnnctttctcctactgatatagtcaagat 764  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  20006249 tcccatattattctgaaagcataaatcataatattacatgttcataacttttaaaggtattggttcctttttttctttctcctactgatatagtcaagat 20006150  T
Q  765 ttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatcat 839  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  20006149 ttaatataaatcaccaattcttacatttatgtg-ttttttgtaggcacaacaccatatgattgataaaccatcat 20006076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 49622348 - 49622579
Alignment:
Q  18 agttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcattagtggagacgggatc 117  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  49622348 agttagatatttagaaatcatgttatatccacttgttaatttagttgattaatttaagtttgtgtttcgtaaaatttgctgcattagtggaaacgggatc 49622447  T
Q  118 tacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattggg 217  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49622448 tactttttctgtccaagaggaggttgatcacataaatgaaaacaatgatgaaaatttagaagcaaatattgttcaatcagatgatgaacctaggattggg 49622547  T
Q  218 atgacatttagttttgaagaagaaattaccaa 249  Q
    ||||||||||||| |||||||||| |||||||    
T  49622548 atgacatttagttctgaagaagaagttaccaa 49622579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 54078551 - 54078461
Alignment:
Q  196 agatgaagaacctaggattgggatgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttgga 286  Q
    |||||| ||||||| | |||| |||| ||||| || |  ||||||| ||  |||||||||||||| ||||||||||||||| |||||||||    
T  54078551 agatgatgaacctaaggttggcatgaaatttaattctacagaagaagttgacaaatattacaagaattatgctagatgtataggttttgga 54078461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 115 - 323
Target Start/End: Original strand, 1177850 - 1178055
Alignment:
Q  115 atctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggatt 214  Q
    |||||||||||||    |||||||| | ||||||||||||||| || |  ||| ||||||||||||||||||| |||||| ||  || |||| || | ||    
T  1177850 atctacttcttctaattaagaggagatcgatcacataaatgaatattgcaatggaaatttagaagcaaatattattcaagaagcagatgaacttaaggtt 1177949  T
Q  215 gggatgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaatatgcaa 314  Q
    |||||| ||||| ||| ||||||||   |||  |||||||  |||  ||||||| |||||||||||||||||| || ||||||||||| |||  ||||||    
T  1177950 gggatgtcattttgttctgaagaag---ttataaaatattgaaagtattatgcttgatgtatgggttttggaattggtaaaatcaattaaaagaatgcaa 1178046  T
Q  315 aggatggaa 323  Q
    | |||||||    
T  1178047 atgatggaa 1178055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 9284910 - 9284809
Alignment:
Q  214 tgggatgacatttagttttgaagaagaaattaccaaatattacaagagttatgctagatgtatgggttttggaactgttaaaatcaattcaaaatatgca 313  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||| ||||| | |||||||||| |||||||  | |||||| ||||||||| |||||    
T  9284910 tgggatgacatttagttccgaagaagaaattaccacatattacaagaattatgtttgatgtatgggctttggaatcggtaaaataaattcaaaaaatgca 9284811  T
Q  314 aa 315  Q
    ||    
T  9284810 aa 9284809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 23556713 - 23556752
Alignment:
Q  247 caaatattacaagagttatgctagatgtatgggttttgga 286  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  23556713 caaatattacaagaattatgctagatgtataggttttgga 23556752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 7494890 - 7495015
Alignment:
Q  132 aagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacctaggattgggatgacatttagttt 231  Q
    ||||||||  ||||||||||||||| ||| | ||||| ||||| |||| |||||||||||| | |||||||   | || | || ||||||||||||||      
T  7494890 aagaggagagtgatcacataaatgagaattgagatgataattttgaagaaaatattgttcatgaagatgaa---cttaaggttaggatgacatttagtcc 7494986  T
Q  232 tgaagaagaaattaccaaatattacaaga 260  Q
     ||||||||| |||||||||  |||||||    
T  7494987 ggaagaagaatttaccaaatgctacaaga 7495015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 8532316 - 8532270
Alignment:
Q  524 aatttagctcccttcaatcgaaatcaaaaatattttgttgaagtaaa 570  Q
    ||||||||||||||||||| ||||||| || |||||| |||||||||    
T  8532316 aatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa 8532270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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