View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_11 (Length: 466)
Name: NF2125_high_11
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 25389800 - 25389360
Alignment:
| Q |
18 |
gtattcggtaatcccatgcagcatttctgatcgcggcaagctggagcttcaacattcaaagcctgataatcaatgttctgggaattgtggtcttccaaat |
117 |
Q |
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| T |
25389800 |
gtattcggtaatcccatgcaccatttctgatcgcggcaagctggagcttcaacattcaaagcctgataatcaatgttctgggaattgtggtcttccaaat |
25389701 |
T |
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| Q |
118 |
ggttcttgcattgtgaaccctggtctggtgtgtgcgggagcttcattaagtagctctgtggtattattactaaattctgttgcctaaatgagtctgcttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25389700 |
ggttcttgcattgtgaaccctggtctggtgtgtgcgggagcttcattaagtagctctgtggtattattactaaattctgttgcctaaatgagtctgcttt |
25389601 |
T |
|
| Q |
218 |
ctgaaataattcagatttaaaaatctttcatttgatttaggtttttatcaactgaattgggatatttttcattgtagtttgatcactatctgtgtgtttt |
317 |
Q |
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| T |
25389600 |
ctgaaataattcagatttaaaaatctttcatttgatttaggtttttatcaactgaattgggatatttttcattgtagtttgatcactatctgtgtgtttt |
25389501 |
T |
|
| Q |
318 |
tgtaata---tgtcgttgttcttaatcggttgtttgcatcggtagctcgtcagattttatggttctttatctttagagctgtagattgttttaacccaca |
414 |
Q |
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| T |
25389500 |
tgtaatatgttgttgttgttcttaatcggttgtttacatcggtagctcttcagattttatggttctttatctttagagctgtagattgttttaacccaca |
25389401 |
T |
|
| Q |
415 |
gtaacactctcgtgaaaacaatttgtacttttcatgtctgtg |
456 |
Q |
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| T |
25389400 |
gt-acactctcgtgaaaacaatttgtacttttcatgtttgtg |
25389360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 179 - 361
Target Start/End: Complemental strand, 25384742 - 25384563
Alignment:
| Q |
179 |
tattattactaaattctgttgcctaaatgagtctgctttctgaaataattcagatttaaaaatctttcatttgatttaggtttttatcaactgaattggg |
278 |
Q |
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|||||||||||||| ||| | ||||||||| ||||||||| |||| |||||||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
25384742 |
tattattactaaatgctgctccctaaatgatcctgctttctcaaatgattcagatttaaaaatctgtcattcaatttaggttcttatcaactgaattggt |
25384643 |
T |
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| Q |
279 |
atatttttcattgtagtttgatcactatctgtgtgtttttgtaatatgtcgttgttcttaatcggttgtttgcatcggtagct |
361 |
Q |
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| T |
25384642 |
gtatttttcattgtagtatggtcagtatttgtgtgctgttgtatta---ctttgttcttaattggttgtttacataggtagct |
25384563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 179 - 456
Target Start/End: Complemental strand, 25388246 - 25387972
Alignment:
| Q |
179 |
tattattactaaattctgttgcctaaatgagtctgctttctgaaataattcagatttaaaaatctttcatttgatttaggtttttatcaactgaattggg |
278 |
Q |
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| T |
25388246 |
tattattactaaatgctgttgcctaaattatcctgctttctcaactaattcggattcaaaaatatatcatttgacttaggttcttataaactgaattgat |
25388147 |
T |
|
| Q |
279 |
atatttttcattgtagtttgatcactatctgtgtgtttttgtaatatgtcgttgttcttaatcggttgtttgcatcggtagctcgtcagattttatggtt |
378 |
Q |
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| T |
25388146 |
atattattcattgtagtatggtcagtatttgtgtgtttttttattat---gttgttctttactggttgcttacataggtagcttttcaaattttgccatc |
25388050 |
T |
|
| Q |
379 |
ctttatctttagagctgtagattgttttaacccacagtaacactctcgtgaaaacaatttgtacttttcatgtctgtg |
456 |
Q |
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||| || ||| || |||||||||||||||||||| ||||| || ||||||||||| |||| |||||||| |||| |
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| T |
25388049 |
cttcatgtttgaagttgtagattgttttaacccactgtaactttccgatgaaaacaattcgtacgtttcatgtttgtg |
25387972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 456
Target Start/End: Complemental strand, 25386904 - 25386627
Alignment:
| Q |
179 |
tattattactaaattctgttgcctaaatgagt---ctgctttctgaaataattcagatttaaaaatctttcatttgatttaggtttttatcaactgaatt |
275 |
Q |
| |
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|||||||||||||| |||||||||| ||| ||||||||| || ||| | ||||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
25386904 |
tattattactaaatgttgttgcctaagtgatcatcctgctttctcaatcaatacggatttaaaaatttgtcatttgatttaggttcttatcaactgaatt |
25386805 |
T |
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| Q |
276 |
gggatatttttcattgtagtttgatcactatctgtgtgtttttgtaatatgtcgttgttcttaatcggttgtttgcatcggtagctcgtcagattttatg |
375 |
Q |
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| T |
25386804 |
gatatgtttttcattgtaatatggtcagtatttgtgtggtattgtattatgt---tgttctttataggttgtttacatatgcagcttttcaaattttgct |
25386708 |
T |
|
| Q |
376 |
gttctttatctttagagctgtagattgttttaacccacagtaacactctcgtgaaaacaatttgtacttttcatgtctgtg |
456 |
Q |
| |
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|| ||| || || | |||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||| |||| |
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| T |
25386707 |
gtccttcatgcttgacgttgtagattgttttaacccactgtaacactcccatgaaaacaatttgtacgtttcatgtttgtg |
25386627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 456
Target Start/End: Complemental strand, 25385880 - 25385813
Alignment:
| Q |
390 |
gagctgtagattgttttaacccacagtaacactctc-gtgaaaacaatttgtacttttcatgtctgtg |
456 |
Q |
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| T |
25385880 |
gagctgtagattgttttaacccacgttaacactcccattaaaaacaatttgcacttttcatgtttgtg |
25385813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 25384534 - 25384467
Alignment:
| Q |
386 |
tttagagctgtagattgttttaacccacagtaacactctcgtgaaaacaatttgtacttttcatgtctgtg |
456 |
Q |
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| T |
25384534 |
tttagagttgtagtttgttttaacccactgtgacac---catgaaaacaatttgcacttttcatgtttgtg |
25384467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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