View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2125_high_2 (Length: 631)
Name: NF2125_high_2
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Complemental strand, 41039443 - 41038858
Alignment:
| Q |
16 |
aaaacctcacatatgcagaagttaattgtacaggacctggggccaacgttgagaaacgtgtcaagtgggaaaagaaaccagatagcttaaacttgaatga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41039443 |
aaaacctcacatatgcagaagttaattgtacaggacctggggccaacattgagaaacgtgtcaagtgggaaaagaaaccagatagcttaaacttgaatga |
41039344 |
T |
|
| Q |
116 |
atatactttgtcatctttcataaataatgatggatggcttgccaacgtaccatctattttattgtagtttacttttcttgtctttggttagatatttatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41039343 |
atatactttgtcatctttcataaataatgatggatggcttgccaacgtaccatctattttattgtagtttacttttcttgtctttggttagatatttatg |
41039244 |
T |
|
| Q |
216 |
attcaattgtc-ttgtttatttatgaacaaatgatgaatagctaaatatccaataaaaacgtgcattgttattgcacaaaatataagctaatgtcatgta |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41039243 |
attcaattgtctttgtttatttatgaacaaatgatgaatagctaaatatccaataaaaacgtgcattgttattgcacaaaatataagctaatgtcatgta |
41039144 |
T |
|
| Q |
315 |
aatggggtttataaatcttgtatgtatgttatggcatacactcattcacctgcctagaggttatgattatgataatgattatggataaagatgtcaaaaa |
414 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41039143 |
aatggggtttataaatct----agtatgttatggcatacactcattcacctgcctagaggttatgattatgataatgattatggataaagatgtcaaaac |
41039048 |
T |
|
| Q |
415 |
tgctatatattttttgtgataataactttcgattacnnnnnnnggttacagataataattttcgattataacaaagcatacctctacatatggtaaagat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41039047 |
tgctatatattttttgtgataataactttcgattactttttttggttacagataataactttcgattataacaaagcatacctctac--atggtaaagat |
41038950 |
T |
|
| Q |
515 |
ttaataaaaactattaacctcgatgaaaaacaataaaaattaagttattatgttagatcatgtgaatgattttctttaatcacgtcatgcat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41038949 |
ttaataaaaactattaacctcgatgaaaaacaataaaaattaagttattatgttagatcacgtgaatgattttctttaatcacgtcatgcat |
41038858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 18745523 - 18745566
Alignment:
| Q |
114 |
gaatatactttgtcatctttcataaataatgatggatggcttgc |
157 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
18745523 |
gaatattctttatcatctttcataaataaagatggatggcttgc |
18745566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 54497809 - 54497759
Alignment:
| Q |
111 |
aatgaatatactttgtcatctttcataaataatgatggatggcttgccaac |
161 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
54497809 |
aatgaatattctttatcatctttcataaataagaatggatggcttaccaac |
54497759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University