View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_high_21 (Length: 391)

Name: NF2125_high_21
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_high_21
NF2125_high_21
[»] chr6 (5 HSPs)
chr6 (19-382)||(28611906-28612267)
chr6 (104-158)||(21937272-21937326)
chr6 (147-379)||(11931953-11932186)
chr6 (97-158)||(24509276-24509337)
chr6 (68-164)||(24075613-24075709)
[»] chr3 (9 HSPs)
chr3 (71-382)||(52653769-52654082)
chr3 (97-382)||(33709825-33710111)
chr3 (99-375)||(40574153-40574428)
chr3 (97-197)||(16729868-16729969)
chr3 (269-321)||(23686089-23686141)
chr3 (269-321)||(24058326-24058378)
chr3 (265-354)||(31362247-31362336)
chr3 (97-164)||(29827123-29827190)
chr3 (97-164)||(49784187-49784255)
[»] chr1 (15 HSPs)
chr1 (97-382)||(49053789-49054075)
chr1 (97-382)||(49061369-49061656)
chr1 (104-164)||(44524460-44524520)
chr1 (104-164)||(48366493-48366553)
chr1 (97-164)||(21432107-21432174)
chr1 (202-379)||(42263370-42263548)
chr1 (104-164)||(29681293-29681353)
chr1 (74-164)||(35624689-35624779)
chr1 (104-145)||(1187552-1187593)
chr1 (99-159)||(43358448-43358508)
chr1 (104-158)||(10187024-10187078)
chr1 (265-379)||(50059492-50059606)
chr1 (264-375)||(52282015-52282128)
chr1 (287-379)||(17458409-17458501)
chr1 (115-159)||(19310562-19310606)
[»] chr7 (8 HSPs)
chr7 (74-304)||(12239434-12239667)
chr7 (74-198)||(37469057-37469182)
chr7 (104-164)||(5436972-5437032)
chr7 (97-188)||(1840839-1840928)
chr7 (74-159)||(24870637-24870722)
chr7 (107-238)||(24871526-24871656)
chr7 (264-375)||(34091475-34091586)
chr7 (106-159)||(23757014-23757067)
[»] chr5 (6 HSPs)
chr5 (74-304)||(9851256-9851487)
chr5 (104-382)||(29006480-29006760)
chr5 (97-158)||(2022654-2022715)
chr5 (104-219)||(36203216-36203332)
chr5 (97-158)||(43378132-43378193)
chr5 (106-358)||(9080496-9080749)
[»] chr8 (4 HSPs)
chr8 (126-382)||(12729386-12729644)
chr8 (95-237)||(28695951-28696094)
chr8 (95-321)||(44729133-44729366)
chr8 (104-158)||(25953607-25953661)
[»] chr2 (6 HSPs)
chr2 (115-379)||(14218739-14219004)
chr2 (97-145)||(42779890-42779938)
chr2 (97-164)||(716057-716123)
chr2 (126-369)||(34680971-34681211)
chr2 (97-145)||(16272137-16272185)
chr2 (95-144)||(8367466-8367515)
[»] chr4 (13 HSPs)
chr4 (121-303)||(48779718-48779902)
chr4 (97-164)||(3415594-3415661)
chr4 (115-379)||(20251408-20251674)
chr4 (79-164)||(3425142-3425227)
chr4 (108-164)||(32429726-32429782)
chr4 (104-158)||(18670543-18670597)
chr4 (241-382)||(24391830-24391970)
chr4 (104-164)||(18736861-18736921)
chr4 (97-159)||(30020297-30020359)
chr4 (104-231)||(24129170-24129298)
chr4 (104-164)||(18716188-18716248)
chr4 (180-379)||(47077960-47078154)
chr4 (104-145)||(47071133-47071174)
[»] scaffold0007 (1 HSPs)
scaffold0007 (104-376)||(217750-218013)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 28611906 - 28612267
Alignment:
Q  19 tattagtcagctactcattccaaaggtcacgtctattcatctattaaagagcatgtgttagaacatgtgttggttatttgctgcgataacttgatcaaga 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  28611906 tattagtcagctactcattccaaaggtcacatctattcatctattaaagagtatgtgttagaacatgtgttg-ttatttgctgcaataacttgatcaaga 28612004  T
Q  119 agatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacacataacctttaggttcgattttcccccaccagttatgtcaa 218  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  28612005 agatgatgaatatgaacatgatgaagtgtgcacataaattttaaagtgtgtg--gaacacataacctttaggttcgatttttccccaccagttatgtcaa 28612102  T
Q  219 caatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtg 317  Q
    || ||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  28612103 cagtatgtaaaatggtatatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagta 28612202  T
Q  318 tacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 382  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28612203 tacaaaacaatgttctgtcaattcccctcgtgcactagagataagaaagaatgatttagtataat 28612267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 21937272 - 21937326
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 158  Q
    ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  21937272 ataacttgaccaagaagatgatgaagatgaatatgatgaagtgtgcacataaatt 21937326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 379
Target Start/End: Complemental strand, 11932186 - 11931953
Alignment:
Q  147 tgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaaggg-tatatcagcga 244  Q
    ||||||||||||  ||||  ||||| | ||||| ||||||||||||| ||||  ||||||| ||||||| ||||   ||| ||||||| |||| ||||||    
T  11932186 tgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaaaagggttataccagcga 11932087  T
Q  245 atccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattccc 343  Q
    | |||||||||| ||| ||| ||||||||| ||||||||   ||||||||||||  |||||  || ||||||| || | || ||  ||||||||| | |     
T  11932086 a-ccccttcaggatacgatgaaatccttgatgtgacttgcttattcacaccaagtttatcg-acaatggtagtttatagaataaaattctgtcaaattct 11931989  T
Q  344 ctcgtgcactagagataaaaaagaatgatttagtat 379  Q
    ||||||||||||| | || |||||||||| ||||||    
T  11931988 ctcgtgcactagataaaagaaagaatgatatagtat 11931953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 24509337 - 24509276
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 158  Q
    |||||| | ||||||| ||||||||||||||||||||  |||||||||| |||| |||||||    
T  24509337 tgctgcaaaaacttgaccaagaagatgatgaagatgagtatgatgaagtttgcaaataaatt 24509276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 24075613 - 24075709
Alignment:
Q  68 agcatgtgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    ||||| ||||||||| |||||| |   | |||||| |||||||||| ||||||||||| |||||||| ||||  |||| |||| |||||||| ||||    
T  24075613 agcatatgttagaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatgacaaagtgtgcatataaattccaaag 24075709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 71 - 382
Target Start/End: Complemental strand, 52654082 - 52653769
Alignment:
Q  71 atgtgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtg 170  Q
    |||||||||||| |||||| |   ||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||    
T  52654082 atgtgttagaacctgtgtttggggtttgcggcaataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtg 52653983  T
Q  171 tggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaa-gggtatatcagcgaatccccttcagg-tacaatggaat 267  Q
    ||| ||||| |||||||||||||| |||  ||| ||||||||||| ||||   ||| |||| || |||| | |||||||||||||||| |||||||||||    
T  52653982 tgggacacactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaaaatggttataccggcgaatccccttcaggatacaatggaat 52653883  T
Q  268 ccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaaga 367  Q
    ||||||||||||||| ||||||||| ||||  |||||  || ||||||| |||| || || ||||||||||||  |||||||||||||||| ||  ||||    
T  52653882 ccttgacgtgacttgcacattcacatcaagtgtatcg-acaatggtagtttacagaataaagttctgtcaattttcctcgtgcactagagaaaagtaaga 52653784  T
Q  368 atgatttagtataat 382  Q
    |||||||||||||||    
T  52653783 atgatttagtataat 52653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 97 - 382
Target Start/End: Complemental strand, 33710111 - 33709825
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcga 195  Q
    |||||| ||| ||||| |||||| ||||| | || |||||||||||||| ||||| ||||||| |||| |||||||| ||||| ||||||||||| ||||    
T  33710111 tgctgcaatatcttgaccaagaaaatgat-atgaagaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgggacacactaacctttaggatcga 33710014  T
Q  196 ttttcccccaccagttatgtcaacaatatgtaaaagggtatat--cagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcaca 292  Q
    ||  || |||||||||||||||||   ||| ||||||||||||  | || ||||||||| ||| ||| || ||||||||||||||||||| |||||||||    
T  33710013 ttcacctccaccagttatgtcaaccggatgcaaaagggtatataccggctaatcccctttaggatacgatagaatccttgacgtgacttgcacattcaca 33709914  T
Q  293 ccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 382  Q
    |||||| |||||  || ||||||| |||| || || |||||||||| | | || |||||||||||| || ||||||||||||||||||||    
T  33709913 ccaagcgtatcga-caatggtagtttacagaataaagttctgtcaaattctctggtgcactagagaaaagaaagaatgatttagtataat 33709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 375
Target Start/End: Original strand, 40574153 - 40574428
Alignment:
Q  99 ctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgatt 197  Q
    |||| |||||| ||| || ||||||||||| |||||||||| ||    |||||||||||||| |||||| ||||| ||||| ||||||||| | | ||||    
T  40574153 ctgcaataactcgataaaaaagatgatgaaaatgaacatgaagag---tgcacataaattctgaagtgtatgtgggacacactaacctttaagcttgatt 40574249  T
Q  198 ttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaa 296  Q
      ||||||||||| |||| ||    ||| |||| || ||||||||||||  |||||||| ||| |||||||| ||||||||||||| |||||||||| ||    
T  40574250 cacccccaccagtaatgttaattggatgcaaaatggcatatcagcgaattaccttcaggatactatggaatctttgacgtgacttgcacattcacacgaa 40574349  T
Q  297 gcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgattta 375  Q
    || ||||  ||| || |||| |||| || || |||||||||||| | ||||||||||||||| || |||||||||||||    
T  40574350 gcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactagagaaaagaaagaatgattta 40574428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 16729969 - 16729868
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacacat-aacctttaggttcga 195  Q
    |||||| ||||||||||||| |||| |||||||||||||||||| |||| ||||||| ||||  |||| |||||||  || ||| ||||| |||||||||    
T  16729969 tgctgcaataacttgatcaataagaagatgaagatgaacatgataaagtgtgcacattaatttcaaagcgtgtgtgagactcatcaacctctaggttcga 16729870  T
Q  196 tt 197  Q
    ||    
T  16729869 tt 16729868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 23686141 - 23686089
Alignment:
Q  269 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 321  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  23686141 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 23686089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 24058378 - 24058326
Alignment:
Q  269 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 321  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  24058378 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 24058326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 31362247 - 31362336
Alignment:
Q  265 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcacta 354  Q
    |||||||||||  |||| |||||||||||||| | ||||| ||  | ||||| ||||||| || ||||||||||||  ||||||||||||    
T  31362247 aatccttgacggaacttatacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcacta 31362336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 29827123 - 29827190
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||||| |||||| || |||||| |||||||||||||  |||||||||| || |||||||||| ||||    
T  29827123 tgctgcaataactcgaccaagaaaatgatgaagatgactatgatgaagtttgaacataaattccaaag 29827190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 49784187 - 49784255
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatg-aagtatgcacataaattctaaag 164  Q
    |||||| |||||||||  |||||||||||||| |||||  ||||| |||| ||||||||||||| ||||    
T  49784187 tgctgcaataacttgacgaagaagatgatgaacatgaatgtgatgaaagtgtgcacataaattccaaag 49784255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 97 - 382
Target Start/End: Complemental strand, 49054075 - 49053789
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcga 195  Q
    ||||||||||| || | ||| ||||||| |||||||||||||||||||| | ||||||||||| || | |||||||| | ||| ||||||||||||||||    
T  49054075 tgctgcgataattt-accaaaaagatgaagaagatgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcga 49053977  T
Q  196 ttttcccccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacac 293  Q
    ||  ||||||||||||||  ||||   ||| |||||||| ||| | |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  49053976 ttcgcccccaccagttataccaactggatgcaaaagggttataccggcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacac 49053877  T
Q  294 caagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 382  Q
    |||||||||||  || ||||||| ||||||| || |||||| ||||| |||||||||||||||||  | ||||||||||||||||||||    
T  49053876 caagcatatcga-caatggtagtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaaagaatgatttagtataat 49053789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 97 - 382
Target Start/End: Complemental strand, 49061656 - 49061369
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcga 195  Q
    |||||| |||| || | ||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| | ||| ||  ||||||||||||    
T  49061656 tgctgcaataattttaccaaaaagatgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggttcga 49061557  T
Q  196 ttttcccccaccagttatgtcaacaatatgtaaaaggg-tatatcagcgaatccccttcag-gtacaatggaatccttgacgtgacttgtacattcacac 293  Q
    ||  ||||||||||||||| |||| | ||| ||||||| |||| |  ||||||||||||||  |||||||||||||||||||||| ||| ||||||||||    
T  49061556 ttcgcccccaccagttatgccaactagatgcaaaagggttataccgacgaatccccttcagaatacaatggaatccttgacgtgatttgcacattcacac 49061457  T
Q  294 caagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 382  Q
    ||| |||||||  || ||||||| |||| || || ||| |||||||| ||||||||||||||||| || ||||||||||||||||||||    
T  49061456 caaacatatcg-acaatggtagtttacagaataaagttttgtcaatttccctcgtgcactagagaaaagaaagaatgatttagtataat 49061369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 44524520 - 44524460
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44524520 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattccaaag 44524460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 48366553 - 48366493
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  48366553 ataacttgatcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcgaaag 48366493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 21432174 - 21432107
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  21432174 tgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtgcacataaattccaaag 21432107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 379
Target Start/End: Original strand, 42263370 - 42263548
Alignment:
Q  202 cccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcat 300  Q
    ||||||| |||||||||||| ||| |||| |||||| | | |||||||||||||| |||  |  |||| ||||| ||||||| ||||||| || |||| |    
T  42263370 cccaccaattatgtcaacaaaatgcaaaatggtataacggtgaatccccttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgt 42263469  T
Q  301 atcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 379  Q
    ||||  || || || | |||||||||| ||| |||| ||| | ||||||||||||||| || |||||||||| ||||||    
T  42263470 atcgaacaatgttaatttacaaaacaaagttttgtcgatttctctcgtgcactagagaaaagaaagaatgatatagtat 42263548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 29681293 - 29681353
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  29681293 ataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 29681353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 35624689 - 35624779
Alignment:
Q  74 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    ||||||||| ||||||||   | |||||| ||||||||| ||||||||||||||||||||| || | ||||| ||||||||||||| ||||    
T  35624689 tgttagaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaatattacgaagtgtgcacataaattccaaag 35624779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 1187552 - 1187593
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagt 145  Q
    |||||||||||||||||||||||||| |||| ||||||||||    
T  1187552 ataacttgatcaagaagatgatgaaggtgaatatgatgaagt 1187593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 43358448 - 43358508
Alignment:
Q  99 ctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 159  Q
    |||| |||| |||||||||||||||||||||||||  |||||||||  ||||||| |||||    
T  43358448 ctgcaataaattgatcaagaagatgatgaagatgactatgatgaagcgtgcacatgaattc 43358508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 10187078 - 10187024
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 158  Q
    |||||||||||||||||||||| || ||||  |||||||||  ||||||||||||    
T  10187078 ataacttgatcaagaagatgataaatatgactatgatgaagcgtgcacataaatt 10187024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 50059606 - 50059492
Alignment:
Q  265 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 364  Q
    |||||| |||||||||| || ||||||| | | | ||||| ||| || |||| || | || || ||||||| |||| | ||||||||||||||| || ||    
T  50059606 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 50059507  T
Q  365 agaatgatttagtat 379  Q
    ||||||||| |||||    
T  50059506 agaatgattcagtat 50059492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 52282015 - 52282128
Alignment:
Q  264 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaatt--cccctcgtgcactagagataa 361  Q
    ||||| ||||| ||||||| | |||||||||||||  |||| ||| ||||||| |||| || || ||| ||||||||   | ||| ||||||||||| ||    
T  52282015 gaatctttgacatgacttgcatattcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaa 52282114  T
Q  362 aaaagaatgattta 375  Q
     |||||||||||||    
T  52282115 gaaagaatgattta 52282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 379
Target Start/End: Complemental strand, 17458501 - 17458409
Alignment:
Q  287 ttcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 379  Q
    |||| ||||||| ||||| ||| || |||| ||||||| || ||| | || ||||  ||||||||||||||| |  |||||||||||||||||    
T  17458501 ttcaaaccaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtat 17458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 19310562 - 19310606
Alignment:
Q  115 aagaagatgatgaagatgaacatgatgaagtatgcacataaattc 159  Q
    ||||||||||| |||||| | |||||||||| |||||||||||||    
T  19310562 aagaagatgataaagatgtatatgatgaagtgtgcacataaattc 19310606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 304
Target Start/End: Original strand, 12239434 - 12239667
Alignment:
Q  74 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtgg 173  Q
    ||||||||| ||||||||   |||||||| |||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||  |||| ||||||||    
T  12239434 tgttagaacttgtgttggaggtttgctgcaataacttgattaagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgg 12239533  T
Q  174 aacaca-taacctttaggttcgattttcccccaccagttatgtc-aacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatcct 270  Q
     ||||| ||||||||||||||||||  ||||||||||||||||| |||   ||| |||||||||| || |||||||||||||||| ||| ||| ||||||    
T  12239534 gacacattaacctttaggttcgattcgcccccaccagttatgtcaaaccggatgcaaaagggtatgtcggcgaatccccttcaggatacgatgaaatcct 12239633  T
Q  271 tgacgtgacttgtacattcacaccaagcatatcg 304  Q
    |||||||||||| ||||||||||||||| |||||    
T  12239634 tgacgtgacttgcacattcacaccaagcgtatcg 12239667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 37469182 - 37469057
Alignment:
Q  74 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtgg 173  Q
    ||||||||| ||||||||   ||||| || ||||||||||||||||||||||||||||||||||||| || | ||||||||||||  |||||||||||||    
T  37469182 tgttagaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgg 37469083  T
Q  174 aacaca-taacctttaggttcgattt 198  Q
     ||||| ||||||||||||| |||||    
T  37469082 gacacactaacctttaggtttgattt 37469057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 5437032 - 5436972
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  5437032 ataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 5436972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 1840928 - 1840839
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taaccttta 188  Q
    |||||| |||||||||||||| |||||||||   |||||||||||||   || ||||||| |||||||||||||||||| ||| |||||||||    
T  1840928 tgctgcaataacttgatcaagtagatgatga---tgaacatgatgaaaagtggacataaaatctaaagtgtgtgtggaatacactaaccttta 1840839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 24870722 - 24870637
Alignment:
Q  74 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 159  Q
    ||||||||| | ||||||   |||||||| |||||||||| |||||||||||||||||  ||||||||||  || |||||||||||    
T  24870722 tgttagaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagatagacatgatgaataatacacataaattc 24870637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 24871656 - 24871526
Alignment:
Q  107 acttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccccca 205  Q
    ||||||| ||||||||||||||||| || | ||| |||  |||| ||||||| ||||||||||||  |||||| ||||||||| ||| ||||   ||||     
T  24871656 acttgattaagaagatgatgaagataaatacgataaagagtgcatataaattttaaagtgtgtgt--aacacattaacctttacgtttgattcgtccccg 24871559  T
Q  206 ccagttatgtcaacaatatgtaaaagggtatat 238  Q
    ||||||||| |||  | ||||||||||||||||    
T  24871558 ccagttatgccaatcacatgtaaaagggtatat 24871526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 34091475 - 34091586
Alignment:
Q  264 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 363  Q
    ||||||||||||||||||| ||||||||||||| | |||   | | ||||||| ||||||  || ||||| |||||| | ||| |||| |||||| || |    
T  34091475 gaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcatgcattagagaaaaga 34091574  T
Q  364 aagaatgattta 375  Q
    | ||||||||||    
T  34091575 atgaatgattta 34091586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 23757014 - 23757067
Alignment:
Q  106 aacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 159  Q
    |||||||  ||||| ||||||||||||||||||||||||  || ||||||||||    
T  23757014 aacttgactaagaaaatgatgaagatgaacatgatgaagagtgaacataaattc 23757067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 74 - 304
Target Start/End: Original strand, 9851256 - 9851487
Alignment:
Q  74 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtgg 173  Q
    ||||||||||||||| ||   | |||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||| ||||||||    
T  9851256 tgttagaacatgtgtaggaggtctgctgcaataacttgatcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgg 9851355  T
Q  174 aacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttc-aggtacaatggaatcctt 271  Q
     ||||| |||| ||||||||| ||| | ||| |||||||| | ||||   ||| ||||||||||| | ||||||||||||| || ||| ||||||| |||    
T  9851356 gacacactaacatttaggttcaattct-ccctaccagttaagccaaccgaatgcaaaagggtataccggcgaatccccttcaagatacgatggaatactt 9851454  T
Q  272 gacgtgacttgtacattcacaccaagcatatcg 304  Q
     | |||| ||| ||||||||||||||| |||||    
T  9851455 aatgtgatttgcacattcacaccaagcgtatcg 9851487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 104 - 382
Target Start/End: Complemental strand, 29006760 - 29006480
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccc 202  Q
    |||| ||||| || |||||||| |||||||| |||||||||  ||||||||||||  |||| |||||||  ||||| |||| |||||||||||||  |||    
T  29006760 ataatttgataaaaaagatgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgccc 29006661  T
Q  203 ccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcat 300  Q
    | || |||| | ||||| | ||| |||||||| ||||  |||||||| ||||||  |||||||||||||||||| |||| |  ||||||||||||||| |    
T  29006660 c-actagttttatcaaccagatgcaaaagggttatattggcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcgt 29006562  T
Q  301 atcgttcattggtag-tgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 382  Q
    |||| ||| || ||| | |||| || || |||||||||| |   ||||||||||||| | || || |||||||||||||||||    
T  29006561 atcg-tcaatgttagttttacagaataaagttctgtcaacttatctcgtgcactagaaaaaagaatgaatgatttagtataat 29006480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 2022654 - 2022715
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  2022654 tgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatt 2022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 36203332 - 36203216
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccc 202  Q
    ||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||  |  | ||||||||  |||| ||||||||| ||||||||   ||    
T  36203332 ataacttcatcaagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcgattcgtcc 36203233  T
Q  203 ccaccagttatgtcaac 219  Q
    |||||||||||| ||||    
T  36203232 ccaccagttatgccaac 36203216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 43378132 - 43378193
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 158  Q
    |||||| ||||||||| || |||||||||||||||||| |||||||||| ||||||||||||    
T  43378132 tgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtgcacataaatt 43378193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 358
Target Start/End: Original strand, 9080496 - 9080749
Alignment:
Q  106 aacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccccc 204  Q
    ||||||| |||||||| |||||| ||||||||||| ||    ||||||||||| ||||| |||||| ||||||| ||| ||||| ||||||||  |||||    
T  9080496 aacttgaacaagaagaagatgaaaatgaacatgataaaaagggcacataaattttaaagagtgtgt-gaacacactaagctttaagttcgattcgccccc 9080594  T
Q  205 acc-agttatgtcaacaatatgtaaaagggtatatcagcgaatccccttca-ggtacaatggaatccttgacgtgacttgtacattcacaccaagcatat 302  Q
    ||| | || ||||||  | ||| ||| | ||||| |  |||| |||||||| | |||  |||||| |||||||| ||||| |||||||||  || | |||    
T  9080595 accaatttttgtcaagtagatgcaaatgagtataccgacgaa-ccccttcatgatactttggaattcttgacgtaacttgcacattcacattaaacgtat 9080693  T
Q  303 cgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagaga 358  Q
     | ||| ||||||| ||||||| || ||||| |||||| | |||||| ||||||||    
T  9080694 agatcaatggtagtttacaaaataaagttctctcaattgctctcgtgtactagaga 9080749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 126 - 382
Target Start/End: Complemental strand, 12729644 - 12729386
Alignment:
Q  126 gaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatat 224  Q
    ||||||||||||||||||   | ||||| ||||| |||| |||||||| ||||| |||||||||||| |||||  || |||||||||||| ||||   ||    
T  12729644 gaagatgaacatgatgaaaagtacacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggat 12729545  T
Q  225 gtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaa 322  Q
    | |||||||| ||| | |||| ||||||||||| ||| ||| |||||||||| ||||||| |||||||||||||||||||||  || | ||||| |||      
T  12729544 gcaaaagggttataccggcgattccccttcaggatacgatgaaatccttgacatgacttgcacattcacaccaagcatatcg-acaattgtagtttactg 12729446  T
Q  323 aacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 382  Q
    || || |||||||||||| | ||||||||||||||| || ||||||| ||||||||||||    
T  12729445 aataaagttctgtcaatttctctcgtgcactagagaaaagaaagaattatttagtataat 12729386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 28695951 - 28696094
Alignment:
Q  95 tttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttc 193  Q
    |||| ||| ||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||| |||| |||||||| ||||| |||| ||||||||     
T  28695951 tttgttgcaataacttgaccaagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgtgggacacactaacttttaggttt 28696050  T
Q  194 gattttcccccaccagttatgtcaacaatatgtaaaagggtata 237  Q
    ||||  ||| |||||||||||||||| | ||| |||||||||||    
T  28696051 gattcgccctcaccagttatgtcaaccagatgcaaaagggtata 28696094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 321
Target Start/End: Complemental strand, 44729366 - 44729133
Alignment:
Q  95 tttgctgcgataacttgatcaagaagatgatgaagatgaacatga----tgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttag 189  Q
    |||||| | ||||||||||||||||||| ||||| ||||||||||    |||||  ||||||||||||| |||| |||||||| | ||| |||||||||     
T  44729366 tttgctacaataacttgatcaagaagataatgaaaatgaacatgaatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttat 44729267  T
Q  190 gttcgattttcccccaccagttatgtcaacaatatgtaaaagggta-tatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacat 287  Q
    |||| |||  ||||  | ||||||| ||||   ||| || |||||| || | |||||||||||| ||| |||| ||||||||||||||||||||| ||||    
T  44729266 gttcaattcacccctgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacat 44729167  T
Q  288 tcacaccaagcatatcgttcattggtagtgtaca 321  Q
    ||| ||||||| ||||| ||| || |||| ||||    
T  44729166 tcataccaagcgtatcgatcaatgatagtttaca 44729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 25953661 - 25953607
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 158  Q
    ||||||| | ||||||||| ||||||||||| |||||||||| ||||||||||||    
T  25953661 ataacttaaccaagaagataatgaagatgaatatgatgaagtgtgcacataaatt 25953607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 379
Target Start/End: Original strand, 14218739 - 14219004
Alignment:
Q  115 aagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttat 213  Q
    ||||||||||||||| ||||||||||||    ||||||||||||  |||||||||||   ||| | |||| ||||||||||| ||   ||||||||||||    
T  14218739 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttaaaagtgtgtgttagacaaactaacttttaggttcga-ttcgtcccaccagttat 14218837  T
Q  214 gtcaacaatatgtaaaagggtatatcagcgaatccccttc-aggtacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattgg 312  Q
    ||||||   ||| ||||| ||||||||  ||||| ||||| || ||| || |||||  |||| |||| |||||||||||||||| | ||||  ||| ||     
T  14218838 gtcaactggatgcaaaagagtatatcaatgaatctccttcaagatactatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatga 14218937  T
Q  313 tagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 379  Q
    |||| ||||||| || ||||| ||||||  |||||||||||||||| || |||||||||||||||||    
T  14218938 tagtttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtat 14219004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 42779890 - 42779938
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagt 145  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  42779890 tgctgcaataacttgaccaagaagatgatgaagatgaacataatgaagt 42779938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 716057 - 716123
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||||| ||||||||| ||||||||||||||| ||||| |||||||||  | ||||||||||||||||    
T  716057 tgctgcaataacttgaccaagaagatgatgaa-atgaatatgatgaagcgtacacataaattctaaag 716123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 369
Target Start/End: Original strand, 34680971 - 34681211
Alignment:
Q  126 gaagatgaacatgatgaagtatgcacataaattctaaag--tgtgtgtggaacacataacctttaggttcgattttcccccaccagttatgtcaacaata 223  Q
    |||||||||||||||||||  ||||||| ||||  ||||  |||||| || |||| |||| |||||||||||||| | |||| |||||||| |||| |      
T  34680971 gaagatgaacatgatgaagactgcacatgaatttaaaagcatgtgtggggtacac-taacttttaggttcgatttgctcccatcagttatgccaactagg 34681069  T
Q  224 tgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaa 322  Q
    || |||||| ||||| |||||||||  |||||| ||| ||| ||| ||     ||||||| ||||||||| ||||| ||||| ||| || |||| |||      
T  34681070 tgcaaaaggatatataagcgaatccttttcaggatactatgaaattct-----tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgt 34681164  T
Q  323 aacaatgttctgtcaattcccctcgtgcactagagataaaaaagaat 369  Q
    || || ||| |||||||| | ||||| ||| ||||| || |||||||    
T  34681165 aataaagttttgtcaatttctctcgttcaccagagaaaagaaagaat 34681211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 16272137 - 16272185
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagt 145  Q
    |||||| |||||||||  ||||||||||| |||||||||||||||||||    
T  16272137 tgctgcaataacttgactaagaagatgataaagatgaacatgatgaagt 16272185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 8367515 - 8367466
Alignment:
Q  95 tttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaag 144  Q
    ||||||||  ||||||||| || | |||||||||||||||||||||||||    
T  8367515 tttgctgcagtaacttgatgaaaacgatgatgaagatgaacatgatgaag 8367466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 303
Target Start/End: Original strand, 48779718 - 48779902
Alignment:
Q  121 atgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaac 219  Q
    ||||| ||||||||||||||||||| |||| |||||||  |||| |||||||| | ||| ||||||||| ||||||||  || |  ||||||||| |||     
T  48779718 atgataaagatgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcctctgccagttatgccaat 48779817  T
Q  220 aatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatc 303  Q
       ||| ||||||||||||| | |||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  48779818 tggatgcaaaagggtatatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatc 48779902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 3415661 - 3415594
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  3415661 tgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcacataaattccaaag 3415594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 379
Target Start/End: Complemental strand, 20251674 - 20251408
Alignment:
Q  115 aagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttat 213  Q
    ||||||||||||||||||||||||||||||  | ||||||||||  |||| |||||| || |||| |||  ||||| ||| |||| |||| || ||| ||    
T  20251674 aagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaagcgtgtgtaga-cacactaatatttagattccatttgcccctactagtaat 20251576  T
Q  214 gtcaacaatatgtaaaagggtatatcagcgaatcccc-ttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattg 311  Q
    ||||||   ||| ||| |||||||   | |||||||| |||||| ||  || ||||| |||| ||| |||||||||||||| ||||  ||||| ||| ||    
T  20251575 gtcaaccggatgcaaaggggtatactggtgaatcccccttcaggatatgattgaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatg 20251476  T
Q  312 gtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 379  Q
     |||| |||| || || |||||||||||| | ||||||||||| ||| || ||| |||||||||||||    
T  20251475 atagtttacataataaagttctgtcaatttctctcgtgcactacagaaaagaaataatgatttagtat 20251408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 3425227 - 3425142
Alignment:
Q  79 gaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||| ||||||||  || |||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  3425227 gaacctgtgttggggatctgctgcaataacttgaccaagaagatgatgaagatgaacatgataaagtgtgcacataaattccaaag 3425142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 32429782 - 32429726
Alignment:
Q  108 cttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  32429782 cttgatcaagatgatgatgaagatgaacatgatgaagtgtgcacataaattctaaag 32429726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 18670543 - 18670597
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 158  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  18670543 ataacttgaccaagaagatgataaagatgaacatgatgaagtgtgcacataaatt 18670597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 382
Target Start/End: Complemental strand, 24391970 - 24391830
Alignment:
Q  241 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 339  Q
    |||||||||||||| | ||||||||||||||||  |||||||| |||| |||||||| | |||||  || || |||| |||| || || ||| |||||||    
T  24391970 gcgaatccccttcaagatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaat 24391873  T
Q  340 tcccctcgtgcactagagataaaaaagaatgatttagtataat 382  Q
    | | ||| ||||||||||| || ||||||||||||||||||||    
T  24391872 ttctctcatgcactagagaaaagaaagaatgatttagtataat 24391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 18736861 - 18736921
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    |||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||    
T  18736861 ataacttggtcaagaagatgattaagatgaacttgatgaagtgtgcacataaattccaaag 18736921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 30020359 - 30020297
Alignment:
Q  97 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 159  Q
    |||||| ||||||||| ||||||||||||||||||||  |||||||||| |||| ||||||||    
T  30020359 tgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtgcatataaattc 30020297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 24129170 - 24129298
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccc 202  Q
    |||| ||||||||||||  ||||| |||||| ||||||||   ||||||||||||| ||||  |||| || ||||| ||| |||||  || |||| ||||    
T  24129170 ataatttgatcaagaaggcgatgatgatgaatatgatgaaaagtgcacataaattccaaagcatgtgcgggacacattaatctttaactttgattctccc 24129269  T
Q  203 ccaccagttatgtcaacaatatgtaaaag 231  Q
    |||||||||||| |||| | |||||||||    
T  24129270 ccaccagttatgccaaccagatgtaaaag 24129298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 18716188 - 18716248
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 164  Q
    ||||||||  |||||||||||| ||||||||| ||||||||| || |||||||||| ||||    
T  18716188 ataacttggccaagaagatgattaagatgaacttgatgaagtgtgtacataaattccaaag 18716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 379
Target Start/End: Original strand, 47077960 - 47078154
Alignment:
Q  180 taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtga 278  Q
    |||||||||| ||| ||| | |||||||| |||||||||    ||| |||||||||| | | | ||||||||| ||| ||| ||||||||||||||||||    
T  47077960 taacctttagattctattcttccccaccaattatgtcaatcggatgcaaaagggtatttga-caaatcccctttaggataccatggaatccttgacgtga 47078058  T
Q  279 cttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagta 378  Q
    |||  ||||| ||||||     | || ||| || |||| |||| || || |||||||||||| | ||||| ||||| | | || ||||||||||||||||    
T  47078059 cttacacatttacacca-----aacgatcaatgttagtttacagaataaagttctgtcaatttctctcgtacactacaaaaaagaaagaatgatttagta 47078153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 47071133 - 47071174
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagt 145  Q
    |||||||||  ||||||||||||||||||||||||| |||||    
T  47071133 ataacttgactaagaagatgatgaagatgaacatgacgaagt 47071174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 104 - 376
Target Start/End: Complemental strand, 218013 - 217750
Alignment:
Q  104 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacacataacctttaggttcgattttcccc 203  Q
    |||||||||  || |||||||||||||||||||| |||||   ||||||||||||| |||||||||| |  ||| |  ||||||||| |||||| |||||    
T  218013 ataacttgacaaaaaagatgatgaagatgaacataatgaatagtgcacataaattccaaagtgtgtggg--acaaactacctttaggatcgattctcccc 217916  T
Q  204 caccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcaggtacaatggaatccttgacgtgacttgtacattcacaccaagcatatc 303  Q
    |||||| |||| ||||   ||  ||||||||||| | |||||||         ||| ||| ||||||||| | |||||| ||||||||||||||  ||||    
T  217915 caccagctatgccaacctgatacaaaagggtataccggcgaatcaa-------tacgatgaaatccttgaagagacttgcacattcacaccaagtgtatc 217823  T
Q  304 gttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttag 376  Q
    | ||| ||||||| ||||||| ||||||||| ||||| | |||||| |||||||| || ||||||| ||||||    
T  217822 gatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaaagaattatttag 217750  T

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