View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_high_23 (Length: 387)

Name: NF2125_high_23
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_high_23
NF2125_high_23
[»] chr4 (2 HSPs)
chr4 (63-362)||(30804500-30804800)
chr4 (63-241)||(46672061-46672239)
[»] chr8 (1 HSPs)
chr8 (109-362)||(36051358-36051616)
[»] chr1 (2 HSPs)
chr1 (63-361)||(47631341-47631629)
chr1 (63-240)||(29702793-29702970)
[»] chr7 (2 HSPs)
chr7 (63-238)||(33254747-33254922)
chr7 (63-362)||(20079812-20080111)
[»] chr2 (2 HSPs)
chr2 (63-240)||(8974613-8974789)
chr2 (63-240)||(37623301-37623483)
[»] chr6 (5 HSPs)
chr6 (297-362)||(1462662-1462727)
chr6 (207-283)||(1452142-1452217)
chr6 (207-283)||(1463834-1463909)
chr6 (109-178)||(1452249-1452319)
chr6 (109-178)||(1463941-1464011)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 63 - 362
Target Start/End: Complemental strand, 30804800 - 30804500
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaannnnnnngataattaacctaatgcttattacaactcaaaattttgttttattcttatagttt 162  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||| ||||||||| |||||||||||||| | |||||||||    
T  30804800 ggagtgcatagagaattaatttaaggcatttagttcaatatttttgataattaacttaatgctaattacaacttaaaattttgttttaattttatagttt 30804701  T
Q  163 tagtttattttagtgaaccacctaacnnnnnnnnn-catgactccgtcaacgttttatgtcaagacactaataacacttgacatgttttgttgttatggc 261  Q
    ||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30804700 tagtttattttagtgaaccacctaacttttttttttcatgactctgtcaacgttttatgtcaagacactaataacacttgacatgtcttgttgttatggc 30804601  T
Q  262 tttgttcttttcatgatttgaaattgaattttgttattgtattgtacttgcatgttagatatctctaattgtgcatgttcagaattttgggtttcactaa 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30804600 tttgttcttttcatgatttgaaattgaattttgttattgtattgtacttgcatgttagatatctctaattgtgcatgttcagaattttgggtttcactaa 30804501  T
Q  362 t 362  Q
    |    
T  30804500 t 30804500  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 46672239 - 46672061
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaa-nnnnnnngataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagt 160  Q
    ||||||||||||||||||||||||||||||||||||||         || |||||| ||||||||||||||||| ||| ||| ||||||  |||||  ||    
T  46672239 ggagtgcatagagaattaatttaaggcatttagttcaacttttttttatgattaacttaatgcttattacaacttaaattttgtgtttttatcttacggt 46672140  T
Q  161 tttagtttattttagtgaaccacctaacnnnnnnnnncatgactccgtcaacgttttatgtcaagacactaataacacttg 241  Q
    ||||||||||| ||||| |||||||||          ||||||||||| | |||||||||| |||||||||||||||||||    
T  46672139 tttagtttattctagtgtaccacctaa--ttttttttcatgactccgttaccgttttatgttaagacactaataacacttg 46672061  T

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Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 109 - 362
Target Start/End: Complemental strand, 36051616 - 36051358
Alignment:
Q  109 ataattaacctaatgcttattacaactcaaaattttgttttattcttatagttttagtttattttagtgaaccacctaacnnnnnnnnncatgactccgt 208  Q
    ||||||||  ||||||||||||||||| ||  || |||||||| |||| |||||||||||||| ||||| |||||||||          |||||||||||    
T  36051616 ataattaatttaatgcttattacaacttaattttgtgttttat-cttacagttttagtttattctagtgtaccacctaa-tttttttttcatgactccgt 36051519  T
Q  209 caacgttttat-----gtcaagacactaataacacttgacatgttttgttgttatggctttgttcttttcatgatttgaaattgaattttg---ttattg 300  Q
    || ||||||||     ||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||  | |||||   ||||||    
T  36051518 caccgttttattttatgtcaagacactaacaatactt-acatgttttgttgttatggctttgttctcttcatgatttgaaatgaatttttgttattattg 36051420  T
Q  301 tattgtacttgcatgttagatatctctaattgtgcatgttcagaattttgggtttcactaat 362  Q
    |||||||||||||| || ||| | ||||||||||| |||| |||  ||||||||||||||||    
T  36051419 tattgtacttgcattttggatttttctaattgtgcttgttaagatgtttgggtttcactaat 36051358  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 63 - 361
Target Start/End: Complemental strand, 47631629 - 47631341
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaannnnnnngataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagtt 161  Q
    ||||||| ||||||||||||||||||| ||||||||||       |||||||||| | | | ||||||||||| ||| ||| |||||   ||||||||||    
T  47631629 ggagtgcgtagagaattaatttaaggcttttagttcaatttttt-gataattaacgtcacgtttattacaacttaaattttgtgtttctatcttatagtt 47631531  T
Q  162 ttagtttattttagtgaaccacctaacnnnnnnnnncatgactccgtcaacgttttatgtcaagacactaataacacttgacatgttttgttgttatggc 261  Q
    ||||||||||||||||| | || |||          |||||||||||||  |||||||||||||||||||||||||||||||||||||       ||||     
T  47631530 ttagtttattttagtgacctacgtaa---aaagaatcatgactccgtcactgttttatgtcaagacactaataacacttgacatgttt-------atggt 47631441  T
Q  262 tttgttcttttcatgatttgaaattgaattttgttattgtattgtacttgcatgttagatatctctaattgtgcatgttcagaattttgggtttcactaa 361  Q
    |||||||  |||||||||||||||    |||| |||||| ||||||||||||| || ||| ||||||||| ||  |||||||||||||||||||||||||    
T  47631440 tttgttcccttcatgatttgaaataattttttcttattgcattgtacttgcattttggatctctctaattatgtttgttcagaattttgggtttcactaa 47631341  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 29702793 - 29702970
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaannnnnnngataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagtt 161  Q
    ||||||||||||||||||||||||||||||||||||||        || |||||| ||||||||||||||||| ||| ||| ||||||  ||||| ||||    
T  29702793 ggagtgcatagagaattaatttaaggcatttagttcaattttttt-atgattaacttaatgcttattacaacttaaattttgtgtttttatcttacagtt 29702891  T
Q  162 ttagtttattttagtgaaccacctaacnnnnnnnnncatgactccgtcaacgttttatgtcaagacactaataacactt 240  Q
    |||||||||| |||||  ||||||||          ||||||||||| | |||||||||||||||||||||||||||||    
T  29702892 ttagtttattctagtgtcccacctaatttttttttccatgactccgttaccgttttatgtcaagacactaataacactt 29702970  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 33254747 - 33254922
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaannnnnnngataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagtt 161  Q
    ||||||||||||||||||||||||||||||||||| ||        || |||||| ||||||||||||||||| ||| ||| ||||||  ||||| ||||    
T  33254747 ggagtgcatagagaattaatttaaggcatttagtttaattttttttatgattaacttaatgcttattacaacttaaattttgtgtttttatcttacagtt 33254846  T
Q  162 ttagtttattttagtgaaccacctaacnnnnnnnnncatgactccgtcaacgttttatgtcaagacactaataacac 238  Q
    |||||||||| || || |||||||||          ||||||||||| | |||||||||||||||||||||||||||    
T  33254847 ttagtttattctaatgtaccacctaa-tttttttttcatgactccgttaccgttttatgtcaagacactaataacac 33254922  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 362
Target Start/End: Original strand, 20079812 - 20080111
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaannnnnnngataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagtt 161  Q
    ||||||| ||||||||||||||||| | ||||||||||       |||||||||| | ||| ||||||||| | ||| ||| |||||   ||||||||||    
T  20079812 ggagtgcgtagagaattaatttaagacttttagttcaatttttttgataattaacgtcatgtttattacaagttaaattttgtgtttctatcttatagtt 20079911  T
Q  162 tt-agtttattttagtgaaccacctaa-----cnnnnnnnnncatgactccgtcaacgttttatgtcaagacactaataacacttgacatgttttgttgt 255  Q
    || ||||||||||||||| |||| |||     |         |||||||| |||| | ||||||||||||| |||||||||| |||||||||||          
T  20079912 tttagtttattttagtgatccacgtaaaaaaacaaaaaaaatcatgactctgtcacccttttatgtcaagatactaataacatttgacatgttt------ 20080005  T
Q  256 tatggctttgttcttttcatgatttgaaattgaattttgttattgtattgtacttgcatgttagatatctctaattgtgcatgttcagaattttgggttt 355  Q
     ||||||||||||  |||||||||||||||  | ||||||||||| ||||||||||||| |  ||| | ||||||| ||  |||||| |||||| | |||    
T  20080006 -atggctttgttcccttcatgatttgaaatgaatttttgttattgcattgtacttgcatttgggatctttctaattatgtttgttcataatttttgattt 20080104  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 8974789 - 8974613
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaannnnnnngataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagtt 161  Q
    |||||||||||||||||||||| |||||||||||||||        || |||||| ||||||||||||||||| ||| ||| ||||||  ||||| | ||    
T  8974789 ggagtgcatagagaattaattttaggcatttagttcaattttttt-atgattaacataatgcttattacaacttaaattttgtgtttttatcttacaatt 8974691  T
Q  162 ttagtttattttagtgaaccacctaacnnnnnnnnncatgactccgtcaacgttttatgtcaagacactaataacactt 240  Q
    |||||||||| ||||| |||| ||||          ||||||||||| | |||||||||||||||||||||||||||||    
T  8974690 ttagtttattctagtgtaccatctaa-tttttttttcatgactccgttaccgttttatgtcaagacactaataacactt 8974613  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 37623301 - 37623483
Alignment:
Q  63 ggagtgcatagagaattaatttaaggcatttagttcaa-----nnnnnnngataattaacctaatgcttattacaactcaaaattt-tgttttattctta 156  Q
    ||||||||||||||||||||||||||||||||||||||             || |||||| ||||||||||||||||| ||| ||| ||||||  |||||    
T  37623301 ggagtgcatagagaattaatttaaggcatttagttcaattttttttttttaatcattaacttaatgcttattacaacttaaattttgtgtttttatctta 37623400  T
Q  157 tagttttagtttattttagtgaaccacctaacnnnnnnnnncatgactccgtcaacgttttatgtcaagacactaataacactt 240  Q
     |||||||||||||| ||||| |||| ||||          ||||||||||| | |||||||||||||||||||||||||||||    
T  37623401 cagttttagtttattctagtgtaccatctaa-tttttttttcatgactccgttaccgttttatgtcaagacactaataacactt 37623483  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 1462727 - 1462662
Alignment:
Q  297 attgtattgtacttgcatgttagatatctctaattgtgcatgttcagaattttgggtttcactaat 362  Q
    |||||||||||||||||| || ||| |||||||| |||| ||||||||||||||||||||| ||||    
T  1462727 attgtattgtacttgcattttggatttctctaatcgtgcctgttcagaattttgggtttcattaat 1462662  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 1452217 - 1452142
Alignment:
Q  207 gtcaacgttttatgtcaagacactaataacacttgacatgttttgttgttatggctttgttcttttcatgatttgaa 283  Q
    ||||| |||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||  ||| |||||||||    
T  1452217 gtcaatgtttcatgtcaa-acactaataacagttgacatgttttgttattatggctttgttcccttcttgatttgaa 1452142  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 1463909 - 1463834
Alignment:
Q  207 gtcaacgttttatgtcaagacactaataacacttgacatgttttgttgttatggctttgttcttttcatgatttgaa 283  Q
    ||||| |||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||  ||| |||||||||    
T  1463909 gtcaatgtttcatgtcaa-acactaataacagttgacatgttttgttattatggctttgttcccttcttgatttgaa 1463834  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 1452319 - 1452249
Alignment:
Q  109 ataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagttttagtttattttagtga 178  Q
    ||||||||| ||||||||||||||||| ||| ||| |||||   |||||||| || |||||||||||||||    
T  1452319 ataattaacttaatgcttattacaacttaaattttgtgtttctatcttatagcttaagtttattttagtga 1452249  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 1464011 - 1463941
Alignment:
Q  109 ataattaacctaatgcttattacaactcaaaattt-tgttttattcttatagttttagtttattttagtga 178  Q
    ||||||||| ||||||||||||||||| ||| ||| |||||   |||||||| || |||||||||||||||    
T  1464011 ataattaacttaatgcttattacaacttaaattttgtgtttctatcttatagcttaagtttattttagtga 1463941  T

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