View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2125_high_24 (Length: 380)
Name: NF2125_high_24
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_24 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 26084672 - 26085025
Alignment:
| Q |
14 |
gaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26084672 |
gaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcatt |
26084771 |
T |
|
| Q |
114 |
atccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26084772 |
atccgggtctctttggtaaaatgggactttattagattcacaaaattttgcaatctcatcgtctaaggcaacaactagataattaggtataccaactctc |
26084871 |
T |
|
| Q |
214 |
ttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
26084872 |
ttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaactgcgattttctctaataaatttg |
26084971 |
T |
|
| Q |
314 |
ccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26084972 |
ccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatg |
26085025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 26120234 - 26120587
Alignment:
| Q |
14 |
gaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcatt |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||| || | |||||||||| | |||||||||||||||||||||||||||||| |||| |
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|
| T |
26120234 |
gaacactgtatcccaactgcaaaaattctcttagaatacggaatttgagactggagacagcctcgccgtttggaatttttccaacagtatcaataccatt |
26120333 |
T |
|
| Q |
114 |
atccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctc |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26120334 |
atccgggtctcttttgtaaaatgggacttgattcgattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattaggtataccaactctc |
26120433 |
T |
|
| Q |
214 |
ttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttg |
313 |
Q |
| |
|
||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
26120434 |
ttgatattggtgaaccagatctcgaggatctctttcacatttgagtttgcaagggtaactatgatctctcgtttaactgcgattttctctaataaatttg |
26120533 |
T |
|
| Q |
314 |
ccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatg |
367 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26120534 |
ccaatctcgggttcacggattcatcaggagcaacaataggattggttcttaatg |
26120587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 26096947 - 26097297
Alignment:
| Q |
14 |
gaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| | ||||| ||||||||||||||||||| | |||| |
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|
| T |
26096947 |
gaacactatatcccaactgcaaaaattctcttagaatatgaaatttgagcgtggagacagccgcgccgttgaccatttttccaacagtatcaaaaccatt |
26097046 |
T |
|
| Q |
114 |
atccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26097047 |
gtccgggtctctttggtaaaatgggactttattcgattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattaggtataccaactctc |
26097146 |
T |
|
| Q |
214 |
ttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |||| |
|
|
| T |
26097147 |
ttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaactataatctctcgtttaactgcgattttctctaatatctttg |
26097246 |
T |
|
| Q |
314 |
ccaatctcgggttcaagaattcatcaggagcaacagtaggattggttctta |
364 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26097247 |
ccaatcttgggttcacggattcatcaggagcaacattaggactggttctta |
26097297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 26064947 - 26065300
Alignment:
| Q |
14 |
gaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcatt |
113 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||| |||| |
|
|
| T |
26064947 |
gaacgctatatcccagctgcaaaaattcccttagaatacgaaatttaagcccggagacagccgttctctttcctctttttccaacagcatcaataccatt |
26065046 |
T |
|
| Q |
114 |
atccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctc |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26065047 |
atccgggtctcttttgtaaaatgggacttgattcaattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattagatataccaactctc |
26065146 |
T |
|
| Q |
214 |
ttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttg |
313 |
Q |
| |
|
|||||||| ||||||||||| || || || |||| ||||| ||||||||||||| ||||||||||||| ||||||| || ||||| ||||||| ||||| |
|
|
| T |
26065147 |
ttgatattagtgaaccagacttccaggatctccttaacattggagtttgcaagggcaactatgatctcttgtttaactgcgattttatctaatatatttg |
26065246 |
T |
|
| Q |
314 |
ccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatg |
367 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26065247 |
ccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatg |
26065300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 26126891 - 26127244
Alignment:
| Q |
14 |
gaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcatt |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | | | ||||||||||||||||||||| ||| |
|
|
| T |
26126891 |
gaacgctatatcccaactgcaaaaattctcttaaaatacgaaatttaagcccagagacagccgctctccctcctatttttccaacagtatcaatagcatc |
26126990 |
T |
|
| Q |
114 |
atccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctc |
213 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
26126991 |
atccgggtctcttttgtaaaacgggactttatttgattcacaaaactttgaaatttcatcgtctaaggcaacaactaaataattaggtataccgactctc |
26127090 |
T |
|
| Q |
214 |
ttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||||||||||||| || || || ||||||||||||||||||| |
|
|
| T |
26127091 |
ttgatattggtgaaccagacctcgagggtttccttaacattggagtttgcaagggcaactatgatctctcggtttactgcaattttctctaataaatttg |
26127190 |
T |
|
| Q |
314 |
ccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatg |
367 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26127191 |
ccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatg |
26127244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 26036299 - 26036651
Alignment:
| Q |
14 |
gaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagc------cccaccgtttggaatttttccaacagtatcaat |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||| || ||||| |
|
|
| T |
26036299 |
gaacaccatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagcatggttccctcc--ttg----ttttccaatggtgtcaat |
26036392 |
T |
|
| Q |
108 |
atcattatccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtatacca |
207 |
Q |
| |
|
| ||| ||| |||||||||| |||||||||||||| ||| |||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
26036393 |
accatcatctgggtctcttttgtaaaatgggacttgatttgtttcacaaaattttgaaatctcatcgtctaaagcaacaactagataattagatatacca |
26036492 |
T |
|
| Q |
208 |
actctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaata |
307 |
Q |
| |
|
|||||||||||||| | |||||||||||| | ||| |||||||||| || |||||||| | |||||||||||||||||||| | |||||||| |||| |
|
|
| T |
26036493 |
actctcttgatatttgagaaccagacctctaacatctccttcacattggaatttgcaagtgctactatgatctctcgtttaactgagattttctccaata |
26036592 |
T |
|
| Q |
308 |
aatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaat |
366 |
Q |
| |
|
||||||||||| || |||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26036593 |
tctttgccaatcttggattcacggattcatcaggaacaacagtaggattggttcttaat |
26036651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 6773781 - 6773841
Alignment:
| Q |
175 |
tctaaggcaacaactagataattaggtataccaactctcttgatattggtgaaccagacct |
235 |
Q |
| |
|
||||| |||||||| | |||||||| ||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
6773781 |
tctaatgcaacaaccaaataattagatatgccaaccttcttgatattggtgaaccatacct |
6773841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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