View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_high_32 (Length: 355)

Name: NF2125_high_32
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_high_32
NF2125_high_32
[»] chr2 (30 HSPs)
chr2 (15-335)||(13570529-13570855)
chr2 (23-203)||(13563381-13563562)
chr2 (15-198)||(13574228-13574413)
chr2 (234-335)||(36449806-36449907)
chr2 (234-333)||(18904395-18904494)
chr2 (234-335)||(36450893-36450994)
chr2 (234-306)||(16446182-16446254)
chr2 (230-302)||(38839266-38839338)
chr2 (234-323)||(11258795-11258884)
chr2 (234-335)||(11938761-11938861)
chr2 (234-335)||(18797275-18797376)
chr2 (234-315)||(18905980-18906060)
chr2 (234-323)||(38840477-38840566)
chr2 (234-288)||(13568000-13568054)
chr2 (234-283)||(32739651-32739700)
chr2 (230-282)||(41879237-41879289)
chr2 (229-332)||(22587929-22588031)
chr2 (234-288)||(18868952-18869006)
chr2 (234-323)||(18299401-18299490)
chr2 (234-323)||(22848219-22848308)
chr2 (238-323)||(23869519-23869604)
chr2 (234-315)||(26545513-26545594)
chr2 (228-284)||(810804-810860)
chr2 (234-284)||(802614-802664)
chr2 (234-284)||(18300747-18300797)
chr2 (234-323)||(7898719-7898808)
chr2 (234-323)||(11257650-11257738)
chr2 (261-306)||(18869164-18869209)
chr2 (234-283)||(24475252-24475301)
chr2 (234-282)||(7899907-7899955)
[»] chr3 (33 HSPs)
chr3 (234-335)||(54539783-54539884)
chr3 (234-335)||(54540762-54540863)
chr3 (234-335)||(55191967-55192068)
chr3 (234-335)||(22776784-22776885)
chr3 (234-335)||(31645001-31645102)
chr3 (234-289)||(12700201-12700256)
chr3 (224-282)||(6249627-6249685)
chr3 (230-288)||(11670408-11670466)
chr3 (234-323)||(7267671-7267760)
chr3 (230-323)||(8456501-8456594)
chr3 (234-335)||(47610552-47610653)
chr3 (234-302)||(535787-535855)
chr3 (245-323)||(8875945-8876023)
chr3 (234-284)||(19984877-19984927)
chr3 (234-284)||(29932722-29932771)
chr3 (234-284)||(29981876-29981925)
chr3 (234-323)||(11671325-11671414)
chr3 (234-283)||(29931254-29931303)
chr3 (234-283)||(29980408-29980457)
chr3 (234-323)||(34019129-34019218)
chr3 (266-323)||(51348259-51348316)
chr3 (230-323)||(51469996-51470089)
chr3 (234-335)||(54986979-54987080)
chr3 (234-282)||(7758430-7758478)
chr3 (236-335)||(534529-534628)
chr3 (277-335)||(22775817-22775875)
chr3 (229-282)||(6170295-6170348)
chr3 (234-283)||(12703524-12703573)
chr3 (230-335)||(34940159-34940264)
chr3 (234-335)||(47609725-47609826)
chr3 (234-335)||(49216275-49216376)
chr3 (291-335)||(4271525-4271569)
chr3 (234-306)||(53614847-53614918)
[»] scaffold2034 (2 HSPs)
scaffold2034 (234-335)||(261-362)
scaffold2034 (238-335)||(950-1047)
[»] chr6 (19 HSPs)
chr6 (234-335)||(26575026-26575127)
chr6 (238-335)||(10785885-10785982)
chr6 (238-324)||(10784625-10784711)
chr6 (234-335)||(16704469-16704570)
chr6 (230-283)||(14823599-14823652)
chr6 (264-323)||(5658814-5658873)
chr6 (234-333)||(6840220-6840319)
chr6 (234-335)||(3721640-3721741)
chr6 (234-335)||(8659293-8659394)
chr6 (234-335)||(26574647-26574747)
chr6 (234-323)||(8822777-8822866)
chr6 (230-323)||(12382695-12382788)
chr6 (230-283)||(14822384-14822437)
chr6 (238-315)||(1829595-1829672)
chr6 (238-323)||(3333010-3333095)
chr6 (234-315)||(7314908-7314988)
chr6 (234-335)||(8660176-8660276)
chr6 (234-323)||(8821901-8821990)
chr6 (234-302)||(27322073-27322141)
[»] chr5 (27 HSPs)
chr5 (234-323)||(25523097-25523186)
chr5 (234-335)||(28538704-28538805)
chr5 (238-335)||(28539792-28539889)
chr5 (230-335)||(33160259-33160363)
chr5 (238-335)||(36486460-36486557)
chr5 (234-306)||(1796082-1796154)
chr5 (230-306)||(20216764-20216840)
chr5 (234-323)||(24332941-24333030)
chr5 (238-335)||(36485332-36485429)
chr5 (234-335)||(5778808-5778909)
chr5 (234-283)||(19752939-19752988)
chr5 (234-323)||(22940607-22940695)
chr5 (234-306)||(20214223-20214295)
chr5 (234-315)||(25056372-25056454)
chr5 (238-335)||(1797269-1797366)
chr5 (234-323)||(18486886-18486975)
chr5 (234-283)||(19754154-19754203)
chr5 (247-323)||(25524082-25524158)
chr5 (238-289)||(2686419-2686470)
chr5 (264-323)||(21835098-21835157)
chr5 (234-284)||(33158126-33158176)
chr5 (234-323)||(2186798-2186887)
chr5 (234-323)||(5777927-5778016)
chr5 (238-323)||(16650839-16650924)
chr5 (230-283)||(25524151-25524204)
chr5 (230-282)||(2685768-2685820)
chr5 (234-282)||(5962597-5962645)
[»] chr4 (30 HSPs)
chr4 (238-335)||(31599821-31599918)
chr4 (238-335)||(31600957-31601054)
chr4 (234-310)||(17388208-17388284)
chr4 (234-315)||(12129651-12129732)
chr4 (234-298)||(17383020-17383084)
chr4 (234-335)||(1835074-1835175)
chr4 (234-335)||(25685794-25685895)
chr4 (234-335)||(10471360-10471461)
chr4 (238-335)||(13509331-13509428)
chr4 (238-323)||(19750559-19750644)
chr4 (238-323)||(19789162-19789247)
chr4 (238-335)||(35935505-35935602)
chr4 (234-283)||(49308051-49308100)
chr4 (234-305)||(26421624-26421695)
chr4 (234-335)||(5525387-5525488)
chr4 (234-283)||(8757702-8757751)
chr4 (234-283)||(8758861-8758910)
chr4 (234-323)||(10447035-10447124)
chr4 (234-335)||(10448232-10448333)
chr4 (266-335)||(21178056-21178125)
chr4 (234-283)||(49306802-49306851)
chr4 (234-301)||(8155764-8155832)
chr4 (280-323)||(2193439-2193482)
chr4 (230-300)||(21539078-21539148)
chr4 (234-323)||(1290182-1290271)
chr4 (234-335)||(1963224-1963325)
chr4 (234-335)||(5526098-5526199)
chr4 (234-335)||(13386504-13386605)
chr4 (230-323)||(33296247-33296340)
chr4 (238-283)||(33310113-33310158)
[»] scaffold0632 (1 HSPs)
scaffold0632 (234-333)||(3282-3381)
[»] scaffold0019 (1 HSPs)
scaffold0019 (230-323)||(61443-61536)
[»] chr7 (23 HSPs)
chr7 (234-323)||(18371452-18371541)
chr7 (234-306)||(48934904-48934976)
chr7 (230-335)||(769437-769542)
chr7 (230-323)||(18372441-18372534)
chr7 (234-302)||(11658407-11658475)
chr7 (234-302)||(11662556-11662624)
chr7 (230-323)||(22629510-22629603)
chr7 (234-283)||(47369809-47369858)
chr7 (234-323)||(31659651-31659740)
chr7 (230-323)||(31949346-31949439)
chr7 (234-335)||(47525339-47525440)
chr7 (234-335)||(127364-127464)
chr7 (230-323)||(3227131-3227224)
chr7 (234-323)||(3227578-3227667)
chr7 (229-282)||(22630477-22630530)
chr7 (230-283)||(34352810-34352863)
chr7 (234-323)||(42886270-42886359)
chr7 (234-335)||(17781689-17781790)
chr7 (234-323)||(31949786-31949875)
chr7 (230-322)||(14999140-14999231)
chr7 (234-302)||(17782558-17782626)
chr7 (234-282)||(31661034-31661082)
chr7 (230-294)||(46482621-46482685)
[»] chr1 (35 HSPs)
chr1 (234-335)||(45149942-45150044)
chr1 (234-323)||(11437183-11437272)
chr1 (229-283)||(44404465-44404519)
chr1 (237-323)||(50680362-50680448)
chr1 (234-323)||(24422828-24422917)
chr1 (234-323)||(24426059-24426148)
chr1 (230-335)||(25652738-25652843)
chr1 (234-323)||(39153100-39153189)
chr1 (230-335)||(40384749-40384854)
chr1 (234-335)||(14999312-14999410)
chr1 (241-335)||(44411938-44412032)
chr1 (238-323)||(36613888-36613973)
chr1 (238-323)||(43058817-43058902)
chr1 (234-323)||(43059990-43060079)
chr1 (234-335)||(45148609-45148709)
chr1 (234-323)||(52274996-52275085)
chr1 (234-323)||(52276147-52276236)
chr1 (230-335)||(52828042-52828147)
chr1 (235-335)||(16290123-16290223)
chr1 (238-302)||(23980471-23980535)
chr1 (235-315)||(33088609-33088689)
chr1 (234-333)||(51685739-51685838)
chr1 (234-284)||(45157232-45157282)
chr1 (234-315)||(7675451-7675532)
chr1 (234-315)||(11436070-11436151)
chr1 (234-323)||(39699751-39699840)
chr1 (234-323)||(46066551-46066639)
chr1 (234-284)||(39151959-39152009)
chr1 (238-335)||(14999927-15000024)
chr1 (234-335)||(35594245-35594344)
chr1 (234-275)||(39222505-39222546)
chr1 (238-283)||(39698595-39698640)
chr1 (234-323)||(41366115-41366203)
chr1 (230-283)||(43377744-43377797)
chr1 (234-335)||(52827375-52827476)
[»] scaffold0302 (1 HSPs)
scaffold0302 (238-335)||(17502-17599)
[»] scaffold0294 (2 HSPs)
scaffold0294 (230-323)||(5422-5515)
scaffold0294 (230-282)||(4466-4518)
[»] chr8 (29 HSPs)
chr8 (234-335)||(18978047-18978148)
chr8 (234-335)||(22221336-22221437)
chr8 (234-335)||(22227678-22227779)
chr8 (234-335)||(18970938-18971039)
chr8 (234-335)||(18979092-18979193)
chr8 (238-335)||(8388494-8388591)
chr8 (238-335)||(29968309-29968406)
chr8 (234-335)||(45112898-45112998)
chr8 (266-324)||(42982640-42982698)
chr8 (234-323)||(1824062-1824151)
chr8 (234-323)||(1858507-1858596)
chr8 (234-323)||(5514009-5514098)
chr8 (234-323)||(10007747-10007836)
chr8 (234-323)||(30568914-30569003)
chr8 (234-302)||(12353366-12353433)
chr8 (234-301)||(12351949-12352016)
chr8 (234-323)||(8389673-8389762)
chr8 (234-323)||(10006372-10006461)
chr8 (238-335)||(11287808-11287905)
chr8 (230-315)||(43661289-43661374)
chr8 (238-306)||(1823584-1823652)
chr8 (238-306)||(1858029-1858097)
chr8 (230-284)||(5514293-5514347)
chr8 (238-300)||(24122914-24122976)
chr8 (242-323)||(22220424-22220505)
chr8 (234-323)||(24123882-24123971)
chr8 (238-323)||(30335671-30335756)
chr8 (234-323)||(30336485-30336574)
chr8 (235-283)||(32207349-32207397)
[»] scaffold0320 (1 HSPs)
scaffold0320 (230-323)||(19512-19605)
[»] scaffold1303 (1 HSPs)
scaffold1303 (238-323)||(1471-1556)
[»] scaffold0586 (1 HSPs)
scaffold0586 (234-323)||(6371-6460)
[»] scaffold0059 (1 HSPs)
scaffold0059 (234-301)||(3703-3770)
[»] scaffold0049 (1 HSPs)
scaffold0049 (264-323)||(7399-7458)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 13570855 - 13570529
Alignment:
Q  15 tattttcgcaaaattgaagactgaatgagtgggaacaa-agtatttactacgtctggttgccttt------tcgattttgtagtttaaggttgacaagca 107  Q
    |||||||  |||||||||||||| |||||||||||||| ||||||||||||||||| || | |||      ||  |||||||||||||||||||||||||    
T  13570855 tattttcataaaattgaagactgtatgagtgggaacaatagtatttactacgtctgtttccttttctgttttctgttttgtagtttaaggttgacaagca 13570756  T
Q  108 tgttaaattaatttcgtgtttaaaataaatgacatactcaaattagggatacgtttgaggtttgtggtggacatatatcaaagatgctttcttaaaaggt 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  13570755 tgttaaattaatttggtgtttaaaataaatgacatactcaaattagggatacgtttgaggtttgtcgtggacatatatcaaagatgctttcttaaaaggc 13570656  T
Q  208 taaagtgcannnnnnncatctataattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattta 307  Q
    |||||||||        | | |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  13570655 taaagtgcatttttct-acccataactttcaaaaacttgcaattttagtcccttaagtacaaaaactataattttggtcccccaagaattagtcccttta 13570557  T
Q  308 caactttgatcctttttcccaattttga 335  Q
    ||||||||||||||||| ||||||||||    
T  13570556 caactttgatcctttttgccaattttga 13570529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 13563562 - 13563381
Alignment:
Q  23 caaaattgaagactgaatgagtgggaacaa-agtatttactacgtctggttgccttttcgattttgtagtttaaggttgacaagcatgttaaattaattt 121  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||    ||||||||||||||||| |||||||||||||||| |||    
T  13563562 caaaattgaagactgtatgagtgggaacaatagtatttactacgtgtggtttccttttttgatttgtagtttaaggttggcaagcatgttaaattagttt 13563463  T
Q  122 cgtgtttaaaataaatgacatactcaaattagggatacgtttgaggtttgtggtggacatatatcaaagatgctttcttaaa 203  Q
     | || ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  13563462 ggagtataatataaatgacatactcaaattagggatatgtttgaggttggtggtggacatatatcaaagatgctttcctaaa 13563381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 13574413 - 13574228
Alignment:
Q  15 tattttcgcaaaattgaagactgaatgagtgggaacaa-agtatttactacgtctggttgccttttcgattttgtagtttaaggttgacaagcatgttaa 113  Q
    |||||||  |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||    || |||||||||||||| ||||||||||||    
T  13574413 tattttcataaaattgaagactgtatgagtgggaacaatagtatttactacgtgtggtttccttttttgattcgtagtttaaggttggcaagcatgttaa 13574314  T
Q  114 attaatttcgtgtttaaaataaatgacatactcaaattagggatacgtttgaggttt-gtggtggacatatatcaaagatgctttc 198  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  13574313 attaatttcgagtataatataaatgacatactcaaattagggatacgtttcaggtttggtggtggacatatatcaaagatgttttc 13574228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 36449806 - 36449907
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||  |||||||||||||| || ||| ||| ||||||||||||  ||||||||    
T  36449806 tttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgcccccccaagaattaggccctttgcaattttgatccttttgaccaatttt 36449905  T
Q  334 ga 335  Q
    ||    
T  36449906 ga 36449907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 18904395 - 18904494
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||| ||||||||| ||||||||||||||||||||| ||||||| | ||| |||||||||||| |||||| ||||| |||||||  ||||||||    
T  18904395 tttcaaaaacgtgcaattttggccccttaagtacaaaaactacaattttggttccctaagaattagcccctttacatctttggtccttttggccaatttt 18904494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 36450994 - 36450893
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| | ||| |||||||| |||||| ||||| |  ||||||||||||||| | ||| ||| ||||||||||||  ||||||||    
T  36450994 tttcaaaaacttgcaattttggtcccctaagtacagaaactacaatttcggccccccaagaattagctcctttgcaattttgatccttttggccaatttt 36450895  T
Q  334 ga 335  Q
    ||    
T  36450894 ga 36450893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 16446182 - 16446254
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    ||||||||||||||||||||| || | ||| ||||||||||| ||||||||| |||||||||||| |||||||    
T  16446182 tttcaaaaacttgcaattttaacctcataaatacaaaaactacaattttgataccccaagaattaacccattt 16446254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 38839266 - 38839338
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||  |||| |||| |||||||    
T  38839266 taattttcaaaaacttgcaattttagccccctaactacaaaaactacaattttggccccctaagatttagccc 38839338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 11258884 - 11258795
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||||  ||||| |||| |||||||  || ||  ||||||||||||    
T  11258884 tttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttagtcccctaagatttagccccattgcagatttgatcctttt 11258795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 11938861 - 11938761
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| | | | |||||||||||| ||||||||||  |||| |||||||||| | ||| ||| ||||||| ||||| ||||||||    
T  11938861 tttcaaaaacttgcaattttggtctcctaagtacaaaaa-tataattttgcccccctaagaattagctcttttgcaattttgatcatttttgccaatttt 11938763  T
Q  334 ga 335  Q
    ||    
T  11938762 ga 11938761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 18797275 - 18797376
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||||||||||  ||||||| |||||||| |||| || | ||||||| ||| || ||||| |||||||  ||||||||    
T  18797275 tttcaaaaacttgcaattttgaccccttaagtattaaaactacaattttgaccccctaaaatttagcccctttgcatctttggtccttttagccaatttt 18797374  T
Q  334 ga 335  Q
    ||    
T  18797375 ga 18797376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 18906060 - 18905980
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||| | |||| |||| ||||| ||||| || |||||    
T  18906060 tttcaaaaacttgcaattttagccccctaagtacaaaaactacaatttt-agcccctaagatttagctcatttgcatctttg 18905980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 38840566 - 38840477
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||   |||| |||| |||||||  || ||| ||| ||||||||    
T  38840566 tttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttagccccctaagatttagccccattgcaattttaatcctttt 38840477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 13568000 - 13568054
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatccc 288  Q
    |||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||    
T  13568000 tttcaaaaacttgcaattttggccccctaaatacaaaaactacaattttgatccc 13568054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 32739651 - 32739700
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  32739651 tttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttg 32739700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 41879289 - 41879237
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||| ||||||    
T  41879289 taattttcaaaaacttgcaattttggccccctaagtacataaactacaatttt 41879237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 22588031 - 22587929
Alignment:
Q  229 ataattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttccca 328  Q
    |||| |||||||||||||||||||| ||||| || |||||||||||| |||||||  |||  |||| ||||||| ||| || ||||| |||||||  |||    
T  22588031 ataactttcaaaaacttgcaattttggcccc-tatgtacaaaaactacaattttggccccttaagatttagcccctttgcatctttggtccttttggcca 22587933  T
Q  329 attt 332  Q
    ||||    
T  22587932 attt 22587929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 18868952 - 18869006
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatccc 288  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||||    
T  18868952 tttcaaaaacttgcaattttggcctcctaaatacaaaaactacaattttgatccc 18869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 18299401 - 18299490
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||| ||||||| ||| | |||||| |||||||| |||||||  |||| | || ||||||| ||| || |||||||||||||    
T  18299401 tttcaaaaactttcaattttggccacctaagtataaaaactacaattttggccccctatgatttagcccttttgcatctttgatcctttt 18299490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 22848219 - 22848308
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| | ||| ||| ||||||||||| |||||||   ||| |||| ||||||| ||| || ||||| |||||||    
T  22848219 tttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttggctccctaagatttagcccctttgcagctttggtcctttt 22848308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 23869604 - 23869519
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||| ||||| ||| ||||||||||| ||||||    ||| |||| ||||||| ||| || |||||||||||||    
T  23869604 aaaaacttgcaattttggccccctaaatacaaaaactacaattttagctccctaagatttagcccctttgcatctttgatcctttt 23869519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 26545594 - 26545513
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    ||||||||| ||||||||||  |||||||| |||||||| ||||||||||| || | |||| ||||||| ||| || |||||    
T  26545594 tttcaaaaatttgcaattttgaccccttaaatacaaaaattataattttgaccctctaagatttagcccctttgcatctttg 26545513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 810860 - 810804
Alignment:
Q  228 tataattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    ||||| |||||||||||||||||||| ||||| |  |||||||||||| ||||||||    
T  810860 tataagtttcaaaaacttgcaattttggccccctgtgtacaaaaactacaattttga 810804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 802664 - 802614
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    |||||||||||||||||||| ||||| |  |||||||||||| ||||||||    
T  802664 tttcaaaaacttgcaattttggccccctgtgtacaaaaactacaattttga 802614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 18300797 - 18300747
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    ||||| ||||||||||||||  |||| ||||||||||||||| ||||||||    
T  18300797 tttcataaacttgcaattttgaccccctaagtacaaaaactacaattttga 18300747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 7898719 - 7898808
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||| | |||||| | |||||| |||||||  |||| |||| |||||||  || ||| ||| ||||||||    
T  7898719 tttcaaaaacttgcaatttttgcctcctaagtatagaaactacaattttggccccctaagatttagccccattgcaattttaatcctttt 7898808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 11257650 - 11257738
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||  ||| |||||| |||||||| |||||||  | || |||| |||||||  || ||| ||||||||||||    
T  11257650 tttcaaaaacttgcaattttaaaccc-taagtataaaaactacaattttggcctcctaagatttagccccattgcaaatttgatcctttt 11257738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 18869209 - 18869164
Alignment:
Q  261 taagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    ||||||||||||||| |||||| |||||| |||| |||||||||||    
T  18869209 taagtacaaaaactacaatttttatcccctaagatttagcccattt 18869164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 24475252 - 24475301
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    ||||||||||||| |||||| ||||| |||||| |||||||| |||||||    
T  24475252 tttcaaaaacttgtaatttttgccccctaagtataaaaactacaattttg 24475301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 7899955 - 7899907
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    |||||||||||||||||||| | ||| |||||||| |||||| ||||||    
T  7899955 tttcaaaaacttgcaattttggtcccctaagtacagaaactacaatttt 7899907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 54539783 - 54539884
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||| |||| ||||| ||||| ||||||||||||||||| ||||||||    
T  54539783 tttcaaaaacttgcaattttaaccccctaaatacaaaaactacaattttgatcccctaagatttagctcatttgcaactttgatcctttttgccaatttt 54539882  T
Q  334 ga 335  Q
    ||    
T  54539883 ga 54539884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 54540863 - 54540762
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||  |||| |||| ||||||| ||| |||||||||||||||||  |||||||    
T  54540863 tttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttggccccctaagatttagcccctttgcaactttgatcctttttgtcaatttt 54540764  T
Q  334 ga 335  Q
    ||    
T  54540763 ga 54540762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 55192068 - 55191967
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||  ||||||||||||||| |||||||  ||| ||||||||| ||| ||| ||| ||||||| |||||  |||||||    
T  55192068 tttcaaaaacttgcaattttggccctctaagtacaaaaactacaattttggcccctcaagaattaacccctttgcaattttgatcatttttgtcaatttt 55191969  T
Q  334 ga 335  Q
    ||    
T  55191968 ga 55191967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 22776885 - 22776784
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||| ||| |||||||||| ||||| || |||||||||||| |||||||  |||| |||||||||||| ||| ||  |||| ||| |||||||||||||    
T  22776885 tttcagaaagttgcaattttggccccctatgtacaaaaactacaattttggccccctaagaattagcccctttgcatatttggtccattttcccaatttt 22776786  T
Q  334 ga 335  Q
    ||    
T  22776785 ga 22776784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 31645001 - 31645102
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||| ||||||| ||||| ||||| ||||||||| |||||| | | || |||| ||||||||||| || ||||| |||||||  ||||||||    
T  31645001 tttcaaaaacttacaattttggccccctaagtgcaaaaactacaattttaacctcctaagatttagcccatttgcatctttggtccttttgaccaatttt 31645100  T
Q  334 ga 335  Q
    ||    
T  31645101 ga 31645102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 12700201 - 12700256
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccc 289  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  12700201 tttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgaccccc 12700256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 6249627 - 6249685
Alignment:
Q  224 catctataattttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    |||| |||| |||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  6249627 catccataactttcaaaaacttgcaattttaatcccttaagtacaaaaactacaatttt 6249685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 11670408 - 11670466
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatccc 288  Q
    ||||||||||||| |||||||||||| ||| |||||| |||||||||||||||| ||||    
T  11670408 taattttcaaaaatttgcaattttagtcccctaagtataaaaactataattttggtccc 11670466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 7267671 - 7267760
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| |||||||| |||||| |||||||  |||| |||| ||||||   || ||||||| ||||||||    
T  7267671 tttcaaaaacttgcaattttggccccctaagtacagaaactacaattttggccccctaagatttagcctcattgcaactttaatcctttt 7267760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 8456501 - 8456594
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||| | ||| ||| ||||||||||| |||||||  |||| |||| ||||||   || ||| ||||||||||||    
T  8456501 taattttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttggccccctaagatttagcctcattgcaaatttgatcctttt 8456594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 47610653 - 47610552
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  47610653 tttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtccttttgaccaatttt 47610554  T
Q  334 ga 335  Q
    ||    
T  47610553 ga 47610552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 535855 - 535787
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    |||||||||||||||||||| | ||||||||||  |||||||||||||| | |||| |||| |||||||    
T  535855 tttcaaaaacttgcaattttggtcccttaagtattaaaactataattttcaccccctaagatttagccc 535787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 8875945 - 8876023
Alignment:
Q  245 tgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||| |||||||||||| |||||||  |||| |||| |||||| |||| ||  |||| |||||||    
T  8875945 tgcaattttagccccttatgtacaaaaactacaattttggccccctaagatttagccaatttgcatatttggtcctttt 8876023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 19984877 - 19984927
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||||||||    
T  19984877 tttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttga 19984927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 29932771 - 29932722
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  29932771 tttcaaaaacttgcaattttggcccc-taagtacaaaaactacaattttga 29932722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 29981925 - 29981876
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  29981925 tttcaaaaacttgcaattttggcccc-taagtacaaaaactacaattttga 29981876  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 11671414 - 11671325
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||||| ||| || |||||||| |  ||||| |||| | || ||| ||| |||||| ||||| |||||||    
T  11671414 tttcaaaaacttgcaattttagccccctaaatataaaaactacagatttgaccccctatgatttaacccctttacatctttggtcctttt 11671325  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 29931254 - 29931303
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  29931254 tttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttg 29931303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 29980408 - 29980457
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  29980408 tttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttg 29980457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 34019218 - 34019129
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||||||  |||| || ||||||| |||| ||||||| ||||| || | ||||| ||||| || ||||| |||||||    
T  34019218 tttcaaaaacttgcaattttgaccccctaggtacaaacactacaattttggtcccctaaaatttagctcatttgcatctttggtcctttt 34019129  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 51348316 - 51348259
Alignment:
Q  266 acaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||  ||||||||||||||| |||| ||||| ||||||||||||||||| ||||    
T  51348316 acaaaaatgataattttgatcccctaagatttagctcatttacaactttgatcatttt 51348259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 51469996 - 51470089
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||| | |||||    |||| |||| |||||||  || |||||||| |||||||    
T  51469996 taattttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttaacccccctaagatttagccccattgcaactttggtcctttt 51470089  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 54987080 - 54986979
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| |||| ||||||| ||| || ||| ||||||||||||||||| || | |||| ||||| | ||| || |||||||| ||||  ||||||||    
T  54987080 tttcaaaaagttgcgattttagtcccctatgtataaaaactataattttgaccctctaagatttagctcctttgcatctttgatcattttggccaatttt 54986981  T
Q  334 ga 335  Q
    ||    
T  54986980 ga 54986979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 7758430 - 7758478
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    ||||||||||||||||||||  |||| ||||||||||||||| ||||||    
T  7758430 tttcaaaaacttgcaattttgaccccctaagtacaaaaactacaatttt 7758478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 534529 - 534628
Alignment:
Q  236 tcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||||||||||||||||  || | || |||||||||||| |||||||  |||| |||| |||||| |||| || ||||| ||| |||  ||||||||||    
T  534529 tcaaaaacttgcaattttgacctcctatgtacaaaaactacaattttggccccctaagatttagcctatttgcatctttggtccatttggccaattttga 534628  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 22775817 - 22775875
Alignment:
Q  277 aattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||||||  ||||||||||||||||| ||| ||  |||| |||||||||||||||||||    
T  22775817 aattttggccccccaagaattagcccctttgcagatttggtcctttttcccaattttga 22775875  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 6170295 - 6170348
Alignment:
Q  229 ataattttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    |||| ||||||||||||||||||||   |||||||||||||||| || ||||||    
T  6170295 ataactttcaaaaacttgcaattttgatcccttaagtacaaaaattacaatttt 6170348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 12703573 - 12703524
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||| |||||||    
T  12703573 tttcaaaaatttgtaattttggccccctaagtacaaaaactacaattttg 12703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 34940264 - 34940159
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaa 329  Q
    ||||||| |||||||||||||||||  | |||| ||| ||||| || ||||||| ||| | || |||||||||||||  |  |||| || |||||| |||    
T  34940264 taatttttaaaaacttgcaattttaatctcttatgtataaaaattacaattttggtcctctaataattagcccatttgtatatttggtcttttttctcaa 34940165  T
Q  330 ttttga 335  Q
    ||||||    
T  34940164 ttttga 34940159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 47609725 - 47609826
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | |||||    |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  47609725 tttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttaacccccctaagatttagccccattgcaactttggtccttttgaccaatttt 47609824  T
Q  334 ga 335  Q
    ||    
T  47609825 ga 47609826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 49216275 - 49216376
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| ||||||||||  |||| || |||||||||||| |||| ||  |||  |||| ||||| ||||| || |||||||| ||||  ||||||||    
T  49216275 tttcaaaaagttgcaattttgaccccctatgtacaaaaactacaattatgtccccttaagatttagctcatttgcatctttgatcattttggccaatttt 49216374  T
Q  334 ga 335  Q
    ||    
T  49216375 ga 49216376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 4271525 - 4271569
Alignment:
Q  291 aagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||| ||||||||||| |||||||||||||||||  |||||||||    
T  4271525 aagatttagcccatttgcaactttgatcctttttgtcaattttga 4271569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 53614847 - 53614918
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    |||||||||||| ||||||||| ||  ||  || |||||||| |||||||  |||||||||||||||||||||    
T  53614847 tttcaaaaacttacaattttagtcctctatatataaaaactacaattttgg-cccccaagaattagcccattt 53614918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 261 - 362
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| |||||||||| | ||| || |||||||||||||||||||| ||||| |||||||||||| ||| ||  ||||||||||||||||||||||    
T  261 tttcaaaaagttgcaattttggtcccctatgtacaaaaactataattttggtcccctaagaattagcccctttgcatatttgatcctttttcccaatttt 360  T
Q  334 ga 335  Q
    ||    
T  361 ga 362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 1047 - 950
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||| |||||||||| | |||||| ||||||||||||||||||||  ||||||||||||||||| ||| ||  |||| |||||||||||||||||||    
T  1047 aaaaagttgcaattttggtcccttatgtacaaaaactataattttggccccccaagaattagcccctttgcatatttggtcctttttcccaattttga 950  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 26575127 - 26575026
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||  |||| |||| ||| | | ||| ||||||||||||||||| ||||||||    
T  26575127 tttcaaaaacttgcaattttaaccccttaagtacaaaaactacaattttggccccctaagatttaactcctttgcaactttgatcctttttgccaatttt 26575028  T
Q  334 ga 335  Q
    ||    
T  26575027 ga 26575026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 10785982 - 10785885
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||| ||||||||||| |||| ||||||||||||||| |||||| | |||  |||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  10785982 aaaaatttgcaattttaaccccctaagtacaaaaactacaattttaaccccttaagatttagcccctttgcaactttgatcctttttaccaattttga 10785885  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 10784625 - 10784711
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatccttttt 324  Q
    ||||||||||||||||| |||| |||||| |||||||| |||||||  |||| |||| ||||||| ||| |||||||||||||||||    
T  10784625 aaaaacttgcaattttaaccccctaagtataaaaactacaattttggcccccaaagatttagcccctttgcaactttgatccttttt 10784711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 16704570 - 16704469
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||||||||||| |||||||||||   |||| ||||||  ||| ||||| |||||||||||  |||||||    
T  16704570 tttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgatcctttaagatttagcctctttgcaactatgatcctttttgtcaatttt 16704471  T
Q  334 ga 335  Q
    ||    
T  16704470 ga 16704469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 14823652 - 14823599
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  14823652 taattttaaaaaacttgcaattttagccccttaagtacagaaactacaattttg 14823599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 5658814 - 5658873
Alignment:
Q  264 gtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||| ||||||||||||  |||| ||||||||||| ||||||||||||||||    
T  5658814 gtacaaaaactacaattttgatcccttaagatttagcccatttgcaactttgatcctttt 5658873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 6840220 - 6840319
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| |||| ||||| ||||||||| |||||||||||||||||||| || | |||| |||  || ||| || |||||||||||||  ||||||||    
T  6840220 tttcaaaaagttgcgattttggccccttaaatacaaaaactataattttgaccctctaagatttaatccctttgcatctttgatccttttgaccaatttt 6840319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 3721640 - 3721741
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||| ||||| ||||||| || |||  |||| |||||||  || |||||||| |||||||  ||||||||    
T  3721640 tttcaaaaacttgcaattttgaccccctaagtaccaaaaccataatttagaccccttaagatttagccccattgcaactttggtccttttgaccaatttt 3721739  T
Q  334 ga 335  Q
    ||    
T  3721740 ga 3721741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 8659293 - 8659394
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  8659293 tttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtccttttgaccaatttt 8659392  T
Q  334 ga 335  Q
    ||    
T  8659393 ga 8659394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 26574647 - 26574747
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||   ||  ||||||||||||||| | ||||||||||  |||| ||||||| ||| ||||||||||| |||||  |||||||    
T  26574647 tttcaaaaacttgcaattttgaacctctaagtacaaaaactaca-ttttgatcccttaagatttagcccctttgcaactttgatcttttttgtcaatttt 26574745  T
Q  334 ga 335  Q
    ||    
T  26574746 ga 26574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 8822866 - 8822777
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | ||||| |  |||| |||| |||||||| || |||||||| |||||||    
T  8822866 tttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttagcccccctaagatttagcccaattgcaactttggtcctttt 8822777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 12382788 - 12382695
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||| ||||| ||| ||||||  |||| ||||||  ||||||||||||||||||||| |||| ||| ||| ||| || ||||| |||||||    
T  12382788 taatttttaaaaatttgtaattttgaccccctaagtattaaaactataattttgatccccaaagatttaacccttttgcatctttggtcctttt 12382695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 14822384 - 14822437
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||||||| ||||| |||||| | |||||| |||||||    
T  14822384 taattttcaaaaacttgcaattttggccccataagtatagaaactacaattttg 14822437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 1829672 - 1829595
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    ||||||||||||||||  |||| |||||| |||||||| |||||||  |||| |||| ||||||| ||| || |||||    
T  1829672 aaaaacttgcaattttgaccccctaagtataaaaactacaattttggccccctaagatttagcccctttgcatctttg 1829595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 3333095 - 3333010
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||| |||| ||||| ||||| || |||||||||||| |||||| | || | || | ||||||| ||| ||||||||||||||||    
T  3333095 aaaaagttgcgattttggccccctatgtacaaaaactacaattttaaccctctaaaatttagcccctttgcaactttgatcctttt 3333010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 7314908 - 7314988
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    |||||||||||||||||||| ||||| ||||||  ||||| | |||||||| |||| |||| ||||||| ||| || |||||    
T  7314908 tttcaaaaacttgcaattttggcccc-taagtatcaaaacaacaattttgaccccctaagatttagcccctttgcatctttg 7314988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 8660276 - 8660176
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  ||||| |||||| ||||| | ||||| |  |||| |||| ||||| |  || ||||||||||||||||  ||||||||    
T  8660276 tttcaaaaacttgcaattttgacccct-aagtaccaaaaccacaatttagcccccctaagatttagctccattgcaactttgatccttttgaccaatttt 8660178  T
Q  334 ga 335  Q
    ||    
T  8660177 ga 8660176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 8821901 - 8821990
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| ||||| |  || |||||||| |||||||    
T  8821901 tttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagctccattgcaactttggtcctttt 8821990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 27322141 - 27322073
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    |||||||| ||||||||||| ||||| ||||||| ||||| | ||||||   |||| ||||||||||||    
T  27322141 tttcaaaatcttgcaattttggccccctaagtaccaaaaccacaattttccccccctaagaattagccc 27322073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 25523097 - 25523186
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||| ||||||| ||| || |||||||||||||    
T  25523097 tttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttgaccccctaagatttagcccctttgcatctttgatcctttt 25523186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 28538704 - 28538805
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||   |||| |||| ||||||| ||| |||||||||||||||||  |||||||    
T  28538704 tttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttagccccctaagatttagcccctttgcaactttgatcctttttgtcaatttt 28538803  T
Q  334 ga 335  Q
    ||    
T  28538804 ga 28538805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 28539889 - 28539792
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||||||||||||||  |||  ||||||||||||||| ||||||| ||||| |||| |||| || ||| ||||||||||||||||| ||||||||||    
T  28539889 aaaaacttgcaattttgaccctctaagtacaaaaactacaattttggtcccctaagatttagtccctttgcaactttgatcctttttgccaattttga 28539792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 33160363 - 33160259
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaa 329  Q
    |||||||||||||||||||||||||||||| |||||| | |||||| |||||||| |||  |||| |||||||| || ||||||| ||||||||  ||||    
T  33160363 taattttcaaaaacttgcaattttagccccctaagtatagaaactacaattttgaccccttaagatttagccca-ttgcaactttaatccttttagccaa 33160265  T
Q  330 ttttga 335  Q
    ||||||    
T  33160264 ttttga 33160259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 36486557 - 36486460
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||||||||||||||  |||| ||||||||||||||| ||||||| ||||| |||| |||| || ||| |||||||||||||||||  |||||||||    
T  36486557 aaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaagatttagtccctttgcaactttgatcctttttgtcaattttga 36486460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 1796082 - 1796154
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    |||||||||||||||| ||| ||| | ||||||||||||||| |||||||||||||||||||||| |||||||    
T  1796082 tttcaaaaacttgcaactttggccacctaagtacaaaaactacaattttgatcccccaagaattaacccattt 1796154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 20216840 - 20216764
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    ||||||||||||||||||||||||||| || ||  ||||||||||| |||||||  |||||||||||||||||||||    
T  20216840 taattttcaaaaacttgcaattttagctccctatatacaaaaactacaattttggccccccaagaattagcccattt 20216764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 24332941 - 24333030
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||||| || | |||| ||| ||| ||| || ||||| |||||||    
T  24332941 tttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaacccctttgcatctttggtcctttt 24333030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 36485332 - 36485429
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||||||| |||||||  || |||||||||||||||||||||||||  |||| |||| ||| ||| ||| ||||||||||| |||||  |||||||||    
T  36485332 aaaaacttacaattttgacctcttaagtacaaaaactataattttggccccctaagatttaacccctttgcaactttgatcatttttgtcaattttga 36485429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 5778909 - 5778808
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  5778909 tttcaaaaacttgcaatttttgccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtccttttgaccaatttt 5778810  T
Q  334 ga 335  Q
    ||    
T  5778809 ga 5778808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 19752939 - 19752988
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  19752939 tttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 19752988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 22940695 - 22940607
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| |||||||||||| || |||||||| |||| || | ||||||| ||| || |||| ||||||||    
T  22940695 tttcaaaaacttgcaattttggccccctaagtacaaaaattacaattttga-cccctaaaatttagccccttttcatcttttatcctttt 22940607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 20214223 - 20214295
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    ||||||||||||||||||||||| |  || |||||||||||| |||||||  ||| ||||||||| |||||||    
T  20214223 tttcaaaaacttgcaattttagcactctatgtacaaaaactacaattttggcccctcaagaattatcccattt 20214295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 25056454 - 25056372
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcc-catttacaactttg 315  Q
    ||||||||||||||||||||  |||| ||||||  ||||||| |||||||| |||| |||| |||||| |||||||| |||||    
T  25056454 tttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcctcatttacatctttg 25056372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 1797366 - 1797269
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||||||||||||||| || |||||   |||||||||| ||||||| ||||  |||| ||||||| ||| |||||||||| | ||||  |||||||||    
T  1797366 aaaaacttgcaattttggctccttataaacaaaaactacaattttggtcccttaagatttagcccctttgcaactttgattccttttttcaattttga 1797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 18486975 - 18486886
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| |||||| | |||| | |||||||  |||| |||| ||||||| ||| || ||||| |||||||    
T  18486975 tttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggccccctaagatttagcccctttgcatctttggtcctttt 18486886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 19754203 - 19754154
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  19754203 tttcaaaaacttgcaattttggccccctaaatacaaaaactacaattttg 19754154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 25524158 - 25524082
Alignment:
Q  247 caattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||| ||| | |||||||||||||||||||||||| |||| |||| ||||||| ||| || ||||  |||||||    
T  25524158 caattttggcctcctaagtacaaaaactataattttgaccccctaagatttagcccctttgcatctttagtcctttt 25524082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 2686470 - 2686419
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccc 289  Q
    ||||||||||||||||   | ||||||||||||||||||||||||| |||||    
T  2686470 aaaaacttgcaattttgatctcttaagtacaaaaactataattttggtcccc 2686419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 21835098 - 21835157
Alignment:
Q  264 gtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||| |||||||| |||| |||| ||| ||| ||| ||||||||||||||||    
T  21835098 gtacaaaaactacaattttgaccccctaagatttaacccctttgcaactttgatcctttt 21835157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 33158126 - 33158176
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    ||||||||||||||||||||  | || ||||||||||||||| ||||||||    
T  33158126 tttcaaaaacttgcaattttgacaccctaagtacaaaaactacaattttga 33158176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 2186798 - 2186887
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| |||||||||| | |   || |||||||||||| |||||| |||||| |||| ||||||  |||||| ||||| |||||||    
T  2186798 tttcaaaaagttgcaattttggtcttctatgtacaaaaactacaattttaatcccctaagatttagccattttacatctttggtcctttt 2186887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 5777927 - 5778016
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||    
T  5777927 tttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtcctttt 5778016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 16650924 - 16650839
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||  |||| |||||| |||||||| ||||||   |||| |||  ||||||||||| || ||||| |||||||    
T  16650924 aaaaacttgcaattttgaccccctaagtataaaaactacaattttagccccctaaggtttagcccatttgcatctttggtcctttt 16650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 25524204 - 25524151
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    ||||||| ||||| ||| |||||| ||||| ||||||||||||||| |||||||    
T  25524204 taatttttaaaaatttgtaattttggccccctaagtacaaaaactacaattttg 25524151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 2685768 - 2685820
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    ||||||||||||||||  |||||| | ||| ||||||||||||||| ||||||    
T  2685768 taattttcaaaaacttataattttggtcccctaagtacaaaaactacaatttt 2685820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 5962645 - 5962597
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    ||||||||| ||| |||||| | ||| ||||||||||||||||||||||    
T  5962645 tttcaaaaatttgtaattttggtcccctaagtacaaaaactataatttt 5962597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 31599821 - 31599918
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||||||||||||||  |||| ||||||||||||||| ||||||| ||||| |||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  31599821 aaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaagatttagcccctttgcaactttgatcctttttgccaattttga 31599918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 31601054 - 31600957
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||||| |||  |||| ||||||||||| |||||||||||||||||  |||||||||    
T  31601054 aaaaacttgcaattttgaccccctaagtacaaaaactacaattttgaccccttaagatttagcccatttgcaactttgatcctttttgtcaattttga 31600957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 17388284 - 17388208
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaa 310  Q
    |||||||||||||||||||| | |||||||||||| |||||| |||||||  ||||||||||||||||| |||||||    
T  17388284 tttcaaaaacttgcaattttggtcccttaagtacataaactacaattttggccccccaagaattagcccctttacaa 17388208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 12129651 - 12129732
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||  |||| ||||||||||| || |||||    
T  12129651 tttcaaaaacttgcaattttggccccgtaagtacaaaaactacaattttgaccccttaagatttagcccatttgcatctttg 12129732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 17383020 - 17383084
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaatta 298  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||||  |||||||||||||    
T  17383020 tttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttggccccccaagaatta 17383084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 1835175 - 1835074
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||  ||||||| |||||||| |||| |||| ||||||| ||| || ||||| |||||||  ||||||||    
T  1835175 tttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccctttgcatctttggtccttttagccaatttt 1835076  T
Q  334 ga 335  Q
    ||    
T  1835075 ga 1835074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 25685895 - 25685794
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| || |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  25685895 tttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagaccccctaagatttagccccattgcaactttggtccttttgaccaatttt 25685796  T
Q  334 ga 335  Q
    ||    
T  25685795 ga 25685794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 10471461 - 10471360
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  10471461 tttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtccttttgaccaatttt 10471362  T
Q  334 ga 335  Q
    ||    
T  10471361 ga 10471360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 13509428 - 13509331
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||| |||||||||| |||||  |||||  ||||||| ||||||||||||| |||| ||||||| ||| || ||||| |||||||  ||||||||||    
T  13509428 aaaaaattgcaattttggccccccaagtatgaaaactacaattttgatcccctaagatttagcccctttgcacctttgctccttttggccaattttga 13509331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 19750644 - 19750559
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||   |||| |||| |||||||  || ||| ||||||||||||    
T  19750644 aaaaacttgcaattttggccccctaagtacaaaaactacaattttacccccctaagatttagccccattgcaaatttgatcctttt 19750559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 19789162 - 19789247
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||   |||| |||| |||||||  || ||| ||||||||||||    
T  19789162 aaaaacttgcaattttggccccctaagtacaaaaactacaattttacccccctaagatttagccccattgcaaatttgatcctttt 19789247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 35935602 - 35935505
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||| |||||||||||||||| |||||||| |||||| |||||||  |||| |||| ||||||   || ||||||| ||||||||  ||||||||||    
T  35935602 aaaaatttgcaattttagccccctaagtacataaactacaattttggccccctaagatttagcctcattgcaactttaatccttttggccaattttga 35935505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 49308100 - 49308051
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  49308100 tttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 49308051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 26421695 - 26421624
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatt 305  Q
    ||||||||||||||||||||  || | ||||||||||||||| |||||||| |||  |||| ||||||||||    
T  26421695 tttcaaaaacttgcaattttgacctcctaagtacaaaaactacaattttgaccccttaagatttagcccatt 26421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 5525387 - 5525488
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  5525387 tttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtccttttgaccaatttt 5525486  T
Q  334 ga 335  Q
    ||    
T  5525487 ga 5525488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 8757702 - 8757751
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||| ||||||||||||| |||||||| |||||| |||||||    
T  8757702 tttcaaaaacttacaattttagccccctaagtacagaaactacaattttg 8757751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 8758910 - 8758861
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| ||||| |||||||| |||||| |||||||    
T  8758910 tttcaaaaacttgcaattttggccccctaagtacagaaactacaattttg 8758861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 10447035 - 10447124
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| |||||||||||||||| || |||||||||| | ||||||   |||| |||| ||||||| ||| || ||||| |||||||    
T  10447035 tttcaaaaagttgcaattttagccccctatgtacaaaaaccacaattttacccccctaagatttagcccctttgcatctttggtcctttt 10447124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 10448333 - 10448232
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| |||| ||||||||||| || |||||||||||| |||||||  || | ||||  |||||| ||| || ||||| |||||||  ||||||||    
T  10448333 tttcaaaaagttgcgattttagccccctatgtacaaaaactacaattttggccctctaagatatagcccctttgcatctttggtccttttggccaatttt 10448234  T
Q  334 ga 335  Q
    ||    
T  10448233 ga 10448232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 21178056 - 21178125
Alignment:
Q  266 acaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||||||||| |||||||| |||| || | ||||||| ||| ||||||||||| ||||| ||||||||||    
T  21178056 acaaaaactacaattttgaccccctaaaatttagcccttttgcaactttgatcatttttgccaattttga 21178125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 49306802 - 49306851
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||| |||  |||||||||||||||| |||||||    
T  49306802 tttcaaaaacttgcaattttggccatttaagtacaaaaactacaattttg 49306851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 8155764 - 8155832
Alignment:
Q  234 tttcaaaaacttgcaattttagc-cccttaagtacaaaaactataattttgatcccccaagaattagcc 301  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||| |||||||  |||| |||| ||||||    
T  8155764 tttcaaaaacttgcaattttagctcccctaagttcaaaaactacaattttggccccctaagatttagcc 8155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 2193482 - 2193439
Alignment:
Q  280 tttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||    
T  2193482 tttgatcccctaagaattagcccctttacaattttgatcctttt 2193439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 21539148 - 21539078
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagc 300  Q
    ||||||| |||||||||||||||| ||| | |||||  |||||||| |||||||| |||| |||| |||||    
T  21539148 taatttttaaaaacttgcaattttggcctcctaagtgtaaaaactacaattttgaccccctaagatttagc 21539078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 1290271 - 1290182
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||| ||||||||||| ||||  ||||||||||||||| ||||||   |||| |||| ||| ||| ||| || ||||| |||||||    
T  1290271 tttcaaaatcttgcaattttggccctctaagtacaaaaactacaattttagccccctaagatttaacccctttgcatctttggtcctttt 1290182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 1963224 - 1963325
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| |||||||||| ||| | || |||||||||||| ||||||   |||| |||||||||||| ||| |||   || ||||||||  |||||||    
T  1963224 tttcaaaaagttgcaattttggcctcctatgtacaaaaactacaattttagccccctaagaattagcccctttgcaatagtggtcctttttagcaatttt 1963323  T
Q  334 ga 335  Q
    ||    
T  1963324 ga 1963325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 5526199 - 5526098
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| ||||||  ||||| | ||||| |  |||| |||| |||||||  || ||| |||| |||||||  ||||||||    
T  5526199 tttcaaaaacttgcaattttggccccctaagtaacaaaaccacaatttagcccccctaagatttagccccattgcaattttggtccttttgaccaatttt 5526100  T
Q  334 ga 335  Q
    ||    
T  5526099 ga 5526098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 13386605 - 13386504
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | ||||| |  |||| ||||  ||||||  || |||||||| |||||||  ||||||||    
T  13386605 tttcaaaaacttgcaattttgaccccataagtaccaaaaccacaatttagcccccctaagatctagccccattgcaactttggtccttttgaccaatttt 13386506  T
Q  334 ga 335  Q
    ||    
T  13386505 ga 13386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 33296247 - 33296340
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||  |||||| | | | |||||| |||||||||||||||| ||||| |  | ||||| ||||| || |||||||| ||||    
T  33296247 taattttcaaaaacttataattttggtctcctaagtataaaaactataattttggtcccctataatttagctcatttgcatctttgatcatttt 33296340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 33310158 - 33310113
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    ||||||||| ||||||||| || ||| |||||||||||||||||||    
T  33310158 aaaaacttgtaattttagctccctaaatacaaaaactataattttg 33310113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 3381 - 3282
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||| |||||||  |||| || |||||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||||||||| ||||||||    
T  3381 tttcaaaaacttacaattttgaccccataggtacaaaaactataattttggtcccctaagatttagcccctttgcaactttgatcctttttgccaatttt 3282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 61536 - 61443
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| | || ||||||| ||| || ||||| |||||||    
T  61536 taattttcaaaaacttgcaattttagccccctaagtacaaaaactataattttggccccctatgatttagcccttttgcatctttggtcctttt 61443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 18371452 - 18371541
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||  |||| |||| ||||| ||||| || |||||||||||||    
T  18371452 tttcaaaaacttgcaattttggccccttaagtacaaaaactacaattttggccccctaagatttagcacatttgcatctttgatcctttt 18371541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 48934976 - 48934904
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    ||||||||||||| ||||||  |||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  48934976 tttcaaaaacttgtaattttgaccctctaagtacaaaaactaaaattttgatcccccaagaattagcccattt 48934904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 769437 - 769542
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaa 329  Q
    ||||||||||||||||||||||||  |  | |||||||||||| ||||||||||   |||  ||||||| ||||||| || ||||||||||||| |||||    
T  769437 taattttcaaaaacttgcaattttgacatcctaagtacaaaaattataattttggctcccttagaattaacccatttgcatctttgatccttttgcccaa 769536  T
Q  330 ttttga 335  Q
    ||||||    
T  769537 ttttga 769542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 18372534 - 18372441
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||  |||| |||| ||||||| |||  | ||||| |||||||    
T  18372534 taattttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttggccccctaagatttagcccctttgtatctttggtcctttt 18372441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 11658407 - 11658475
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    |||||||||| ||||||||||||||| || |||||||||||| ||||||| |||| |||||||||||||    
T  11658407 tttcaaaaacatgcaattttagccccctatgtacaaaaactacaattttggtccctcaagaattagccc 11658475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 11662624 - 11662556
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    ||||||||||||||||||||||| |  || ||||||||||||||||||||  |||||||||||||||||    
T  11662624 tttcaaaaacttgcaattttagctctctatgtacaaaaactataattttggccccccaagaattagccc 11662556  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 22629510 - 22629603
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||| |||||| ||| | ||||||||||||||| |||||||  |||| |||| ||||||| ||| || ||||| |||||||    
T  22629510 taattttcaaaaacttgtaattttggcctcctaagtacaaaaactacaattttggccccctaagatttagcccctttgcatctttggtcctttt 22629603  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 47369809 - 47369858
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  47369809 tttcaaaaacttgcaattttagcctcataagtacaaaaactataattttg 47369858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 31659651 - 31659740
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||| |||||||  |||| ||||||||||||||| |||||||  |||| |||| |||||||  || ||| ||||||||||||    
T  31659651 tttcaaaaacttacaattttgaccccctaagtacaaaaactacaattttggccccctaagatttagccccattgcaaatttgatcctttt 31659740  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 31949346 - 31949439
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||    
T  31949346 taattttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtcctttt 31949439  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 47525440 - 47525339
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||||||||| ||||||  ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  47525440 tttcaaaaacttgcaattttagccccctaagtatcaaaaccacaatttagcccccctaagatttagccccattgcaactttggtccttttgaccaatttt 47525341  T
Q  334 ga 335  Q
    ||    
T  47525340 ga 47525339  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 127364 - 127464
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| | ||| ||||||| ||||| | ||||| |  |||| |||| |||||||| || |||||||| |||||||  ||||||||    
T  127364 tttcaaaaacttgcaattttggtcccctaagtaccaaaaccacaatttag-ccccctaagatttagcccaattgcaactttggtccttttgaccaatttt 127462  T
Q  334 ga 335  Q
    ||    
T  127463 ga 127464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 3227131 - 3227224
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||  |||| |||||||  || |||||||| |||||||    
T  3227131 taattttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccttaagatttagccccattgcaactttggtcctttt 3227224  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 3227667 - 3227578
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||    
T  3227667 tttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcacccctaagatttagccccattgcaactttggtcctttt 3227578  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 22630530 - 22630477
Alignment:
Q  229 ataattttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    |||| |||||||||||||||||||| ||||| ||| ||||||||||| ||||||    
T  22630530 ataactttcaaaaacttgcaattttggccccctaattacaaaaactacaatttt 22630477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 34352863 - 34352810
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||| | ||||| | |||||||||||| ||||||||||||||    
T  34352863 taattttcaaaaactttctattttggtcccttaagtacataaactataattttg 34352810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 42886359 - 42886270
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| ||||||||||  |||| ||| ||||||||||| ||||||   |||| |||| ||||||||||| || |||||||| ||||    
T  42886359 tttcaaaaatttgcaattttgaccccctaaatacaaaaactacaattttagccccctaagatttagcccatttgcatctttgatcatttt 42886270  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 17781689 - 17781790
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | |||||    |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  17781689 tttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttaacccccctaagatttagccccattgcaactttggtccttttgaccaatttt 17781788  T
Q  334 ga 335  Q
    ||    
T  17781789 ga 17781790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 31949875 - 31949786
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| ||| ||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||    
T  31949875 tttcaaaaacttgcaattttggccccctaaataccaaaaccacaatttagcacccctaagatttagccccattgcaactttggtcctttt 31949786  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 322
Target Start/End: Complemental strand, 14999231 - 14999140
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatccttt 322  Q
    |||||||||||| |||||||||||  |||| ||| ||||||||||| |||||||   ||| |||| ||||||| ||| || ||||| ||||||    
T  14999231 taattttcaaaa-cttgcaattttgaccccctaaatacaaaaactacaattttggcgccctaagatttagcccctttgcatctttgttccttt 14999140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 17782626 - 17782558
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | ||||| |  |||| |||| |||||||    
T  17782626 tttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccc 17782558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 31661082 - 31661034
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    ||||||||| ||||||||||  ||| ||| |||||||||||||||||||    
T  31661082 tttcaaaaatttgcaattttgaccctttacgtacaaaaactataatttt 31661034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 46482621 - 46482685
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaaga 294  Q
    ||||||||||||| ||| || |||  |||| || ||||||||||||||||||| |||||| ||||    
T  46482621 taattttcaaaaatttgtaaatttgaccccctatgtacaaaaactataattttaatcccctaaga 46482685  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 45150044 - 45149942
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatccccc-aagaattagcccatttacaactttgatcctttttcccaattt 332  Q
    |||||||||||||||||||| ||||||||||||||||||| | |||||||  ||||| |||| ||||||| ||| || |||||||||||||  |||||||    
T  45150044 tttcaaaaacttgcaattttggccccttaagtacaaaaacaacaattttgccccccctaagatttagcccctttgcatctttgatccttttggccaattt 45149945  T
Q  333 tga 335  Q
    |||    
T  45149944 tga 45149942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 11437272 - 11437183
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||||  |||| |||| ||| ||| |||||| |||||||||||||    
T  11437272 tttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttggccccctaagatttaacccttttacatctttgatcctttt 11437183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 44404465 - 44404519
Alignment:
Q  229 ataattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  44404465 ataactttcaaaaactagcaattttagccccctaagtacaaaaactataattttg 44404519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 50680362 - 50680448
Alignment:
Q  237 caaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||  ||||| |||| ||| ||| ||| || |||||||||||||    
T  50680362 caaaaacttgcaattttggccccctaagtataaaaactataattttagtcccctaagatttaacccctttgcatctttgatcctttt 50680448  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 24422828 - 24422917
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||||||  |||| ||||||||||||||| |||||||  |||| |||| |||||||  || ||| ||||||||||||    
T  24422828 tttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggccccctaagatttagccccattgcaaatttgatcctttt 24422917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 24426148 - 24426059
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||||  ||||| |||| |||||||  || ||| |||||| |||||    
T  24426148 tttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttagtcccctaagatttagccccattgcaaatttgatactttt 24426059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 25652738 - 25652843
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaa 329  Q
    ||||||||||||||||||||||||   |||||||||||||||| ||||| ||||  || | |||| ||||||||||| || ||||| || ||||  ||||    
T  25652738 taattttcaaaaacttgcaattttgatcccttaagtacaaaaattataaatttggcccgctaagatttagcccatttgcatctttggtcattttggccaa 25652837  T
Q  330 ttttga 335  Q
    ||||||    
T  25652838 ttttga 25652843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 39153189 - 39153100
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||||| || | |||| ||| ||| ||| || ||||| |||||||    
T  39153189 tttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaacccctttgcatctttggtcctttt 39153100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 40384749 - 40384854
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaa 329  Q
    ||||||||||||| |||||||||||| | | || |||||||||||| ||||||||||||| || | ||||||  ||| || ||||| |||||||  ||||    
T  40384749 taattttcaaaaagttgcaattttagtctcctatgtacaaaaactacaattttgatcccctaaaatttagcctctttgcatctttggtccttttggccaa 40384848  T
Q  330 ttttga 335  Q
    ||||||    
T  40384849 ttttga 40384854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 14999312 - 14999410
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||||||||||| ||||||||||| |    | ||||| ||| | |||||||||||||||||  |||||||    
T  14999312 tttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgatcctc---tatttagctcatctgcaactttgatcctttttgtcaatttt 14999408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 335
Target Start/End: Complemental strand, 44412032 - 44411938
Alignment:
Q  241 aacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||   ||   |||| |||| || ||| ||||||||||||||||| ||||||||||    
T  44412032 aacttgcaattttagtcccctaagtacaaaaactacaattttacccctttaagatttaggccctttgcaactttgatcctttttgccaattttga 44411938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 36613973 - 36613888
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| |||||| ||||| ||||||||||||||| |||||||| |||| |||| ||||||  ||| |||||||  |||||||    
T  36613973 aaaaacttgtaattttggccccctaagtacaaaaactacaattttgaccccctaagatttagcctctttgcaactttagtcctttt 36613888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 43058817 - 43058902
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||  |||| ||||||||||||||| ||||||   || | |||| ||||||| |||||| |||||||||||||    
T  43058817 aaaaacttgcaattttgaccccctaagtacaaaaactacaattttagccctctaagatttagcccctttacatctttgatcctttt 43058902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 43060079 - 43059990
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| ||| ||||||  |||||||||||||||||||| |||||||| |||  |||| ||||| ||||| || ||||| |||||||    
T  43060079 tttcaaaaatttgaaattttgaccccttaagtacaaaaactacaattttgaccccttaagatttagctcatttgcatctttggtcctttt 43059990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 45148609 - 45148709
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| ||||| |||||| |||||||| |||||||  |||| |||| ||| ||| ||| || ||||| |||||||  ||||||||    
T  45148609 tttcaaaaacttgcaattttggccccctaagta-aaaaactacaattttgcccccctaagatttaacccctttgcatctttggtccttttggccaatttt 45148707  T
Q  334 ga 335  Q
    ||    
T  45148708 ga 45148709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 52274996 - 52275085
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||||||  |||| ||||||||||||||| |||||||  |||| |||| ||||||   || ||| ||||||||||||    
T  52274996 tttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgggcccctaagatttagcctcattgcaaatttgatcctttt 52275085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 52276236 - 52276147
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| ||| |||||| ||||| |||||||||||||||||| |||  ||||| |||| |||||||  || ||| ||||||||||||    
T  52276236 tttcaaaaatttgtaattttggccccctaagtacaaaaactataaatttagtcccctaagatttagccccattgcaaatttgatcctttt 52276147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 52828147 - 52828042
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaa 329  Q
    |||||||||||||||||||||||| || || ||||||| ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||  ||||    
T  52828147 taattttcaaaaacttgcaattttggctccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaactttggtccttttgaccaa 52828048  T
Q  330 ttttga 335  Q
    ||||||    
T  52828047 ttttga 52828042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 16290123 - 16290223
Alignment:
Q  235 ttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttg 334  Q
    |||||||| |||||||||| | |||||| ||| |||||||| |||||| | | ||||||||||| ||| ||||||  |||| || ||||| |||||||||    
T  16290123 ttcaaaaagttgcaattttggtcccttatgtataaaaactacaattttaacctcccaagaattaacccctttacatatttggtcattttttccaattttg 16290222  T
Q  335 a 335  Q
    |    
T  16290223 a 16290223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 23980535 - 23980471
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    |||||||||||||||| || || ||||||||||||||||||||||| || || |||| |||||||    
T  23980535 aaaaacttgcaattttggctccctaagtacaaaaactataattttggtctcctaagatttagccc 23980471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 33088689 - 33088609
Alignment:
Q  235 ttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    |||||||||||||||||||  ||| |||||||||||||||| |||||||   ||| |||| ||||||| ||| ||||||||    
T  33088689 ttcaaaaacttgcaattttgaccctttaagtacaaaaactacaattttgcctccctaagatttagcccctttgcaactttg 33088609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 51685838 - 51685739
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| |||| ||||| ||||  || |||||||||||| |||||||| |||| |||| ||||||| ||| || ||||| |||||||  ||||||||    
T  51685838 tttcaaaaagttgcgattttggccctctatgtacaaaaactacaattttgaccccctaagatttagcccctttgcatctttggtccttttggccaatttt 51685739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 45157282 - 45157232
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||||||||    
T  45157282 tttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttga 45157232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 7675532 - 7675451
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    ||||||||||||||||||||  || | |||||| ||||| ||||||||||| |||| |||| ||||||| ||| || |||||    
T  7675532 tttcaaaaacttgcaattttgccctcctaagtaaaaaaattataattttgaccccctaagatttagcccctttgcatctttg 7675451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 11436070 - 11436151
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    |||||||||||||||||||| |||  ||||||| |||||||| |||||||  |||| |||| ||| ||||||| || |||||    
T  11436070 tttcaaaaacttgcaattttggccttttaagtataaaaactacaattttggccccctaagatttaacccatttgcatctttg 11436151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 39699840 - 39699751
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||| |||||||||||||  |||| |||||||| |||||| |||||||  |||| |||| |||||||  || ||||||| ||||||||    
T  39699840 tttcaataacttgcaattttgaccccctaagtacagaaactacaattttggccccctaagatttagccccattgcaactttaatcctttt 39699751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 46066551 - 46066639
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| |||| |||||||||||||| |||||||||||| |||||| | |||| |||| |||||| |||| || || ||||| ||||    
T  46066551 tttcaaaaagttgcgattttagccccttatgtacaaaaactacaatttt-agcccctaagatttagccaatttgcatctctgatcttttt 46066639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 39151959 - 39152009
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    ||||||||||||| |||||| ||||| || |||||||||||| ||||||||    
T  39151959 tttcaaaaacttgtaattttggccccctatgtacaaaaactacaattttga 39152009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 15000024 - 14999927
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||||||||||||||   ||| ||||||||||| ||| |||  ||| | || || | |||| |||||| |||||||||||||||||  |||||||||    
T  15000024 aaaaacttgcaattttgatcccctaagtacaaaatctacaatcatgaccacctaaaatttagtccatttgcaactttgatcctttttgtcaattttga 14999927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 35594245 - 35594344
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||||||||||||||| | ||| ||||||  ||||||| |||||||| |||| || | ||||||| ||| || ||||| |||||||  ||||||||    
T  35594245 tttcaaaaacttgcaatttt-gacccctaagtattaaaactacaattttga-cccctaaaatttagcccctttgcatctttggtccttttagccaatttt 35594342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 39222546 - 39222505
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaacta 275  Q
    |||||||||||||||||||| ||||| |||||| ||||||||    
T  39222546 tttcaaaaacttgcaattttggccccctaagtataaaaacta 39222505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 39698595 - 39698640
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||| ||||||| ||||| |||||||| ||||||||||||||    
T  39698595 aaaaactttcaattttggccccctaagtacagaaactataattttg 39698640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 41366203 - 41366115
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||| ||||||||||||||||||||||  ||||| | ||||| |  |||| |||| |||||||  || |||||||| |||||||    
T  41366203 tttcaaaaacatgcaattttagccccttaagtatcaaaaccacaatttag-ccccctaagatttagccccattgcaactttggtcctttt 41366115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 43377744 - 43377797
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    ||||||| ||| |||||||||||||| || ||||||| ||||| ||||||||||    
T  43377744 taatttttaaacacttgcaattttagtcctttaagtataaaaattataattttg 43377797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 52827375 - 52827476
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | |||||    |||| |||| |||||||  || |||||||| |||||||  ||||||||    
T  52827375 tttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttaacccccctaagatttagccccattgcaactttggtccttttgaccaatttt 52827474  T
Q  334 ga 335  Q
    ||    
T  52827475 ga 52827476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 17502 - 17599
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||  ||||||||||||| ||| ||| ||| || |||| ||||| ||||||||||    
T  17502 aaaaacttgcaattttggccccctaagtacaaaaactacaattttggccccccaagaattatcccctttgcaatttcgatcttttttaccaattttga 17599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 5515 - 5422
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| |||||||  |||  |||| |||||||  |||||| ||||||||||||    
T  5515 taattttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttgcccccttaagatttagccccattacaaatttgatcctttt 5422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 4466 - 4518
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataatttt 282  Q
    |||||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  4466 taattttcaaaaacttacaattttagccccttaagtacaaaaattacaatttt 4518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 18978047 - 18978148
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||| ||| ||||||| ||||| ||||||||||||||| |||||||  |||  |||| ||||||| ||| ||||||||||||||||| ||||||||    
T  18978047 tttcaaaatctttcaattttggccccctaagtacaaaaactacaattttggccccttaagatttagcccctttgcaactttgatccttttttccaatttt 18978146  T
Q  334 ga 335  Q
    ||    
T  18978147 ga 18978148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 22221437 - 22221336
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||  ||||||| |||||||| |||| |||| ||||||| |||||| |||||||||||||  ||||||||    
T  22221437 tttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccctttacatctttgatccttttagccaatttt 22221338  T
Q  334 ga 335  Q
    ||    
T  22221337 ga 22221336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 22227779 - 22227678
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||||||||||||||  |||| ||||||  ||||||| |||||||| |||| |||| ||||||| |||||| |||||||||||||  ||||||||    
T  22227779 tttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccctttacatctttgatccttttagccaatttt 22227680  T
Q  334 ga 335  Q
    ||    
T  22227679 ga 22227678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 18970938 - 18971039
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||||| ||| ||||||| ||||| ||||||||||||||| |||||||| |||  |||| ||| ||| ||| |||||||| |||||||| ||||||||    
T  18970938 tttcaaaatctttcaattttggccccctaagtacaaaaactacaattttgacccctgaagatttaacccctttgcaactttggtcctttttgccaatttt 18971037  T
Q  334 ga 335  Q
    ||    
T  18971038 ga 18971039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 18979193 - 18979092
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    |||||| ||||||||||||| ||||| ||| || |||||||| |||||||  |||  | || ||||||||||| ||||||||||||||||| ||||||||    
T  18979193 tttcaacaacttgcaattttggccccctaaatataaaaactacaattttggccccttatgatttagcccatttgcaactttgatcctttttgccaatttt 18979094  T
Q  334 ga 335  Q
    ||    
T  18979093 ga 18979092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 8388494 - 8388591
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||  |||| |||| ||||||| ||| |   |||| ||||||| |||||||||||    
T  8388494 aaaaagttgcaattttagccccctatgtacaaaaactataattttggccccctaagatttagcccctttgcgtttttggtccttttgcccaattttga 8388591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 29968406 - 29968309
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||||||||||||||| ||||| ||||||||||||||| |||| || ||||| |||| |||||||  || ||||||| ||| ||||  ||||||||||    
T  29968406 aaaaacttgcaattttggccccctaagtacaaaaactacaattctggtcccctaagatttagccccattgcaactttaatcattttggccaattttga 29968309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 45112898 - 45112998
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaatttt 333  Q
    ||||||||| ||| |||||||| | || ||||||||||| |||||||||| ||||| |||||||||||| ||| ||| ||||||| |||||  |||||||    
T  45112898 tttcaaaaatttgtaattttagtctct-aagtacaaaaattataattttggtcccctaagaattagcccctttgcaattttgatcttttttatcaatttt 45112996  T
Q  334 ga 335  Q
    ||    
T  45112997 ga 45112998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 42982698 - 42982640
Alignment:
Q  266 acaaaaactataattttgatcccccaagaattagcccatttacaactttgatccttttt 324  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |||||    
T  42982698 acaaaaactacaattttgacccctcaagaattagcccatttacaattttgatcattttt 42982640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 1824151 - 1824062
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| | ||| ||||||||||||||| |||||||  |||| |||| ||||||  ||| || ||||| |||||||    
T  1824151 tttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggccccctaagatttagccattttgcatctttggtcctttt 1824062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 1858596 - 1858507
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| | ||| ||||||||||||||| |||||||  |||| |||| ||||||  ||| || ||||| |||||||    
T  1858596 tttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggccccctaagatttagccattttgcatctttggtcctttt 1858507  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 5514009 - 5514098
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||| ||||||| ||||| ||||||||||||||| |||||||  |||| || | ||||||| ||| || ||||| |||||||    
T  5514009 tttcaaaaacttccaattttggccccctaagtacaaaaactacaattttgcccccctaaaatttagcccctttgcatctttggtcctttt 5514098  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 10007836 - 10007747
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| |||||| | |||| | ||||||| ||||| |||| ||||||| ||| || ||||| |||||||    
T  10007836 tttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggtcccctaagatttagcccctttgcatctttggtcctttt 10007747  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 30568914 - 30569003
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| || |||||||   | |||| |||||||||||||||||||||||||| |||| ||||||| ||| || ||||| |||||||    
T  30568914 tttcaaaaagttacaattttgatctcttaggtacaaaaactataattttgatcccctaagatttagcccctttgcatctttggtcctttt 30569003  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 12353433 - 12353366
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagccc 302  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||||||  |||| |||| |||||||    
T  12353433 tttcaaaaacttgcaattttggccccctaagtac-aaaactataattttggccccctaagatttagccc 12353366  T

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Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 12351949 - 12352016
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcc 301  Q
    ||||||||| ||||||||||  |||| ||||||||||||||| |||||||| |||| |||| ||||||    
T  12351949 tttcaaaaatttgcaattttgaccccctaagtacaaaaactacaattttgaccccctaagatttagcc 12352016  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 8389762 - 8389673
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| |||||||||| | |||||| |||||||||||| ||||||  ||||| |||| ||| ||| ||||||  |||| |||||||    
T  8389762 tttcaaaaagttgcaattttggtcccttatgtacaaaaactacaattttagtcccctaagatttaacccctttacatttttggtcctttt 8389673  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 10006372 - 10006461
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||||| ||||||  ||||| | |||||||  |||| |||| ||||||| ||| || ||||| |||||||    
T  10006372 tttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccctaagatttagcccctttgcatctttggtcctttt 10006461  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 11287808 - 11287905
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttttcccaattttga 335  Q
    |||||||||||||||| ||||  |||||||| |||||| |||||||  |||| |||||||| | | ||| ||| ||||||| |||||  |||||||||    
T  11287808 aaaaacttgcaattttggcccactaagtacagaaactacaattttggccccctaagaattaactcctttgcaattttgatcatttttatcaattttga 11287905  T

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Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 43661289 - 43661374
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttg 315  Q
    ||||||| ||||| || ||||||| | |||||| ||||||||||||||||||||  |||| |||| ||||||| ||| || |||||    
T  43661289 taattttaaaaaagttacaattttggtcccttatgtacaaaaactataattttggccccctaagatttagcccctttgcatctttg 43661374  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 1823584 - 1823652
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    ||||||||||||||||  |||  ||||||||||||||| ||||| | ||||| |||| |||||||||||    
T  1823584 aaaaacttgcaattttgaccctctaagtacaaaaactacaatttcggtcccctaagatttagcccattt 1823652  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 1858029 - 1858097
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccattt 306  Q
    ||||||||||||||||  |||  ||||||||||||||| ||||| | ||||| |||| |||||||||||    
T  1858029 aaaaacttgcaattttgaccctctaagtacaaaaactacaatttcggtcccctaagatttagcccattt 1858097  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 5514347 - 5514293
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttga 284  Q
    ||||||| ||||||||||||||||||||   ||| ||||||||||| ||||||||    
T  5514347 taattttaaaaaacttgcaattttagccttctaaatacaaaaactacaattttga 5514293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 24122914 - 24122976
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagc 300  Q
    ||||| ||||||||||  |||| ||||||||||||||||||||||  ||||| |||| |||||    
T  24122914 aaaaatttgcaattttgaccccctaagtacaaaaactataattttagtcccctaagatttagc 24122976  T

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Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 22220424 - 22220505
Alignment:
Q  242 acttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||  |||| || ||| |||||||| |||||||  |||| |||| ||||||||||| || ||||| |||||||    
T  22220424 acttgcaattttgaccccctatgtataaaaactacaattttggccccctaagatttagcccatttgcatctttggtcctttt 22220505  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 24123971 - 24123882
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||||||| ||| ||||||||| |||| || ||||||   | || |||| ||||||| ||| || ||||| |||||||    
T  24123971 tttcaaaaacttgcaattttggcctcttaagtactaaaattacaattttagcctcctaagatttagcccctttgcatctttggtcctttt 24123882  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 30335671 - 30335756
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||||||| || |  |||||||||||| || |||||| | |||| |||| ||||||| ||| || ||||| |||||||    
T  30335671 aaaaacttgcaattttggctcgctaagtacaaaaattacaattttaaccccctaagatttagcccctttgcatctttggtcctttt 30335756  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 30336574 - 30336485
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||  |||||||||| | ||||||||||||||| |||||| | || | |||| ||||||  ||| || ||||| |||||||    
T  30336574 tttcaaaaacttataattttagcctcctaagtacaaaaactacaattttaaccctctaagatttagccattttgcatctttggtcctttt 30336485  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 32207397 - 32207349
Alignment:
Q  235 ttcaaaaacttgcaattttagccccttaagtacaaaaactataattttg 283  Q
    |||||||||||||||||||  | || ||||||||||||||| |||||||    
T  32207397 ttcaaaaacttgcaattttgacgccctaagtacaaaaactacaattttg 32207349  T

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Target: scaffold0320 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 19512 - 19605
Alignment:
Q  230 taattttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    |||||||||||| ||||||||||| ||||| |||||| |||||||| ||||||||||||| |||| ||| ||| ||| || |||||||| ||||    
T  19512 taattttcaaaaccttgcaattttggccccctaagtataaaaactacaattttgatcccctaagatttaacccctttgcatctttgatcatttt 19605  T

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Target: scaffold1303 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 1471 - 1556
Alignment:
Q  238 aaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||||||||||  |||| || ||| ||||||||||||||||| |||| |||| ||||||||||| || ||||| |||||||    
T  1471 aaaaacttgcaattttgaccccctatgtataaaaactataattttgaccccctaagatttagcccatttgcatctttggtcctttt 1556  T

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Target: scaffold0586 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 6371 - 6460
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||||||| || | ||||||||||| || |||||||||||| |||||||| |||| |||| ||||||  ||| || ||||| |||||||    
T  6371 tttcaaaaagttacgattttagccccctatgtacaaaaactacaattttgaccccctaagatttagcctttttgcatctttggtcctttt 6460  T

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Target: scaffold0059 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 3703 - 3770
Alignment:
Q  234 tttcaaaaacttgcaattttagccccttaagtacaaaaactataattttgatcccccaagaattagcc 301  Q
    |||||||||||||||||||| ||||| | |||| | |||||||||||||  ||||| |||| ||||||    
T  3703 tttcaaaaacttgcaattttggccccctgagtaaagaaactataattttagtcccctaagatttagcc 3770  T

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Target: scaffold0049 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 7458 - 7399
Alignment:
Q  264 gtacaaaaactataattttgatcccccaagaattagcccatttacaactttgatcctttt 323  Q
    ||||| |||||| |||||||| |||| |||| ||||||| ||| ||||||||||||||||    
T  7458 gtacagaaactacaattttgaccccctaagatttagcccctttgcaactttgatcctttt 7399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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