View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_high_37 (Length: 329)

Name: NF2125_high_37
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_high_37
NF2125_high_37
[»] chr1 (6 HSPs)
chr1 (3-312)||(47584011-47584320)
chr1 (3-312)||(47574294-47574620)
chr1 (4-98)||(47567413-47567504)
chr1 (7-104)||(47626923-47627020)
chr1 (262-313)||(47568252-47568303)
chr1 (261-303)||(47287562-47287604)
[»] chr6 (9 HSPs)
chr6 (42-104)||(22086440-22086502)
chr6 (48-101)||(18979956-18980009)
chr6 (48-101)||(20084252-20084305)
chr6 (40-101)||(20236379-20236440)
chr6 (40-101)||(22130363-22130424)
chr6 (40-101)||(22206565-22206626)
chr6 (42-104)||(21968547-21968609)
chr6 (63-101)||(24386719-24386757)
chr6 (40-101)||(18996058-18996119)
[»] scaffold0074 (1 HSPs)
scaffold0074 (40-101)||(49340-49401)
[»] scaffold0007 (1 HSPs)
scaffold0007 (40-101)||(6886-6947)
[»] chr8 (1 HSPs)
chr8 (33-101)||(10401925-10401993)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 47584011 - 47584320
Alignment:
Q  3 aatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584011 aatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggta 47584110  T
Q  103 tgtcatttctaaactttaaactagatgtcttgataaatgaattaccttttgtggatccgttcttatttgaactcgaaattgaccatccaaagaaactaac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584111 tgtcatttctaaactttaaactagatgtcttgataaatgaattaccttttgtggatccgttcttatttgaactcgaaattgaccatccaaagaaactaac 47584210  T
Q  203 attgtagatccccataagcgaaagcttttaccttggtctcaacgccagaagatcatcaaaggaattgcccgtggaattctttatctccatgaagattctc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47584211 attgtagatccccataagcgaaagcttttaccttggtctcaacgccagaagatcatcaaaggaattgcccgtggaattctttacctccatgaagattctc 47584310  T
Q  303 gcctcaaaat 312  Q
    ||||||||||    
T  47584311 gcctcaaaat 47584320  T

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Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 47574294 - 47574620
Alignment:
Q  3 aatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggta 102  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||||||||||||| |||||||||    
T  47574294 aatctagtaagattactaggattttgtttggaagatgaggagaagatactaatctttgagtatgtgccaaacaagagtcttgattactttttatttggta 47574393  T
Q  103 tgtcatttctaaactt--------------taaactagatgt--cttgataaatgaattaccttttgtggatccgttcttatttgaactcga-aattgac 185  Q
     ||  ||| |||||||              ||||||||| |   |||||||||||||| ||||||| ||||||| || | ||| ||||| || |||  ||    
T  47574394 agttgtttttaaacttaaatattataactttaaactagaagcgccttgataaatgaatgaccttttatggatccattatgattcgaactggataatcaac 47574493  T
Q  186 catccaaagaaactaacattgtagatccccataagcgaaagcttttaccttggtctcaacgccagaagatcatcaaaggaattgcccgtggaattcttta 285  Q
    | |||||| ||||||| |||||||| ||||| |||||||| || ||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  47574494 cttccaaataaactaatattgtagacccccagaagcgaaaactattatcttggtctcaacgtcagaaaatcatcaaaggagttgcccgtggaattcttta 47574593  T
Q  286 tctccatgaagattctcgcctcaaaat 312  Q
    |||||||||||||||||||||||||||    
T  47574594 tctccatgaagattctcgcctcaaaat 47574620  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 47567413 - 47567504
Alignment:
Q  4 atctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctattt 98  Q
    ||||||||||||||||||||| || ||||||||||||   ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  47567413 atctagtgagattactaggatattatttggaagatga---gaagatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 47567504  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 47626923 - 47627020
Alignment:
Q  7 tagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggtatg 104  Q
    ||||||| ||| ||||||||||  | |||||  |||| ||||||||  ||||||| |||||||| ||||||||||||||| |||| ||||||||||||    
T  47626923 tagtgaggttaataggattttgccttgaagaccaagaaaagatactcgtctatgaatatgtgcctaacaaaagtcttgatcacttcctatttggtatg 47627020  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 47568252 - 47568303
Alignment:
Q  262 aggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaatt 313  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||| ||||||    
T  47568252 aggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatt 47568303  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 47287562 - 47287604
Alignment:
Q  261 aaggaattgcccgtggaattctttatctccatgaagattctcg 303  Q
    ||||||||||||||||||| |||||||| || |||||||||||    
T  47287562 aaggaattgcccgtggaatgctttatcttcacgaagattctcg 47287604  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 22086502 - 22086440
Alignment:
Q  42 gagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggtatg 104  Q
    |||||||||||||| ||||| |||||  | ||||||||||||||||||||| |||||||||||    
T  22086502 gagaagatacttatttatgaatatgtttccaacaaaagtcttgattactttttatttggtatg 22086440  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 18980009 - 18979956
Alignment:
Q  48 atacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    |||||||| ||||| |||||||| |||||||||||||||| |||||||||||||    
T  18980009 atacttatttatgaatatgtgccaaacaaaagtcttgatttctttctatttggt 18979956  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 20084305 - 20084252
Alignment:
Q  48 atacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    |||||||| ||||| |||||||| |||||||||||||||| |||||||||||||    
T  20084305 atacttatttatgaatatgtgccaaacaaaagtcttgatttctttctatttggt 20084252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 20236440 - 20236379
Alignment:
Q  40 aagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    ||||||| |||||||| ||||| | |||||| ||||| ||||||||||||||||||||||||    
T  20236440 aagagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctatttggt 20236379  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 22130424 - 22130363
Alignment:
Q  40 aagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    ||||||| |||||||| ||||| | |||||| ||||| ||||||||||||||||||||||||    
T  22130424 aagagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctatttggt 22130363  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 22206565 - 22206626
Alignment:
Q  40 aagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    ||||||| |||||||| ||||| | |||||| ||||| ||||||||||||||||||||||||    
T  22206565 aagagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctatttggt 22206626  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 21968609 - 21968547
Alignment:
Q  42 gagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggtatg 104  Q
    |||||||||||||| ||||| |||||  | ||||| ||||||||||||||| |||||||||||    
T  21968609 gagaagatacttatttatgaatatgtttccaacaagagtcttgattactttttatttggtatg 21968547  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 24386719 - 24386757
Alignment:
Q  63 tatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  24386719 tatgtgccaaacaaaagtcttgatttctttctatttggt 24386757  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 18996119 - 18996058
Alignment:
Q  40 aagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    ||||||| |||||||| ||||| | |||||| ||| | |||||||||| |||||||||||||    
T  18996119 aagagaaaatacttatttatgaatttgtgcccaactatagtcttgatttctttctatttggt 18996058  T

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Target: scaffold0074 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 49340 - 49401
Alignment:
Q  40 aagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    ||||||| |||||||| ||||| | |||||| |||||||||||||||| |||||||||||||    
T  49340 aagagaaaatacttatttatgaatttgtgcccaacaaaagtcttgatttctttctatttggt 49401  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 6886 - 6947
Alignment:
Q  40 aagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    ||||||| |||||||| ||||| | |||||| |||||||||||||||| |||||||||||||    
T  6886 aagagaaaatacttatttatgaatttgtgcccaacaaaagtcttgatttctttctatttggt 6947  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 10401993 - 10401925
Alignment:
Q  33 gaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 101  Q
    ||||| || ||||| |||||||| ||||| |||||||||||||| ||||||||| ||||| ||||||||    
T  10401993 gaagaagaggagaaaatacttatatatgaatatgtgccgaacaagagtcttgatcactttttatttggt 10401925  T

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