View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_38 (Length: 324)
Name: NF2125_high_38
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 36383660 - 36383360
Alignment:
| Q |
15 |
agaagggtcatctcaagaagtatcaatatgttaagtatctcaagaagtatcaattcgttgtatcaatatgaattcggagtatatgtcaattccaactctc |
114 |
Q |
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| T |
36383660 |
agaagggtcatctcaagaagtatcaatatgttaagtatctcaagaagtatcaattcgttgtatcaatatgaattcggagtatatgtcaattccaactctc |
36383561 |
T |
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| Q |
115 |
aagaagcaattagttgaagtagtttttcttgatcttatatatgaacatctgatgacaagtgactttgaattttttaagtatggatgaactgtataaggtt |
214 |
Q |
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| T |
36383560 |
aagaagcaattagttgaagtagtttttcttgatcttatatatgaacatctgatgacaagtgactttgaatttgttaagtatggatgaactgtataaggtt |
36383461 |
T |
|
| Q |
215 |
gtttttcctgactcaatttttatgagtaccataggttggcatgagcaagtcaatactacttcaaatgctctttagaacttcaaatgtagttgaagaataa |
314 |
Q |
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| T |
36383460 |
gtttttcctgactcaatttttatgagtaccataggttggcatgagcaagtcaatactacttcaaatgctctttagaacttcaaatgtagttgaagaataa |
36383361 |
T |
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| Q |
315 |
t |
315 |
Q |
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| T |
36383360 |
t |
36383360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 36372648 - 36372572
Alignment:
| Q |
215 |
gtttttcctgactcaatttttatgagtaccataggttggcatgagcaagtcaatactacttcaaatgctctttagaa |
291 |
Q |
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||||| || |||||||||||||||||| ||| |||||| ||||| | | |||||||| ||||||||||| ||||||| |
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| T |
36372648 |
gttttcccagactcaatttttatgagttccacaggttgccatgaacgattcaatactgcttcaaatgctgtttagaa |
36372572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 32253437 - 32253512
Alignment:
| Q |
208 |
taaggttgtttttcctgactcaatttttatgagtaccataggttggcatgagcaagtcaatactacttcaaatgct |
283 |
Q |
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||||||||||||||||||||| ||||||| |||| ||| |||||| ||||| | | | |||||| ||||||||||| |
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| T |
32253437 |
taaggttgtttttcctgactctatttttaagagttccacaggttgccatgatccattaaatactgcttcaaatgct |
32253512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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