View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_43 (Length: 317)
Name: NF2125_high_43
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 126 - 301
Target Start/End: Complemental strand, 27711273 - 27711098
Alignment:
| Q |
126 |
ttccttaagatcaattcaataactaaggaaaaattgaaccgtctactaactcgattaattcaaacaatatctttgtcatattctttcatttgatgtgttg |
225 |
Q |
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| T |
27711273 |
ttccttaagatcaattcaataactaaggaaaaattgaaccgtctactaactcgattaattcaaacaataccattgtcatattctttcatttgatgtgttg |
27711174 |
T |
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| Q |
226 |
ttaattttcttaacaatgatttgatcttaggttttatcatgcaaaatgtctacatagttcaaacaagggttatttg |
301 |
Q |
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| T |
27711173 |
ttaattttcttaacaatgttttgatcttaggttttatcatgcaaaatgtctacatagttcaaacaagggttatttg |
27711098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 27717091 - 27716962
Alignment:
| Q |
1 |
tgctaacacgttaattactttttctcttgacactgttacctatcatcgtaactttctcagtgtgaagaggttggccacgacttctaagaatggtgttgtt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27717091 |
tgctaacgcgttaattactttttctcttgacactgttacctatcatcgtaactttctcagtttgaagaggttggccacgacttctaagaatggtgttgtt |
27716992 |
T |
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| Q |
101 |
cctggttatctcagcttcctacgagttcctt |
131 |
Q |
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| T |
27716991 |
cctagtta-ctcagcttcctacgagttcctt |
27716962 |
T |
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