View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_high_46 (Length: 307)

Name: NF2125_high_46
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_high_46
NF2125_high_46
[»] chr4 (1 HSPs)
chr4 (1-298)||(46824087-46824375)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 46824087 - 46824375
Alignment:
Q  1 caattctacttatattctgtggtgtttgacttgatatatacacattgacattggcatgctttgttcagtgtatatgctgcgaattattgaagg-ggagtg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||| ||||||    
T  46824087 caattctacttatattctgtggtgtttgacttgatatatacacattg------gcatgctttgttcagtgtatatgctgcgaattattgaaggtggagtg 46824180  T
Q  100 gaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctcttcgtttgctcttatatatcctctttccatttattgtttgaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||    
T  46824181 gaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctctttgtttgctcttat----cctctttccatttattgtttgaaa 46824276  T
Q  200 attaaccacatggaaacattctacctatacattattaatactgcttacattggtagatttcaatttaaaattcaaatgtttgagtatttattgatgatg 298  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  46824277 attaaccacatggagacattctacctatacattattaatactgctgacattggtaaatttcaatttaaaattcaaatgtttgagtatttattaatgatg 46824375  T

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