View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_47 (Length: 305)
Name: NF2125_high_47
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 38033759 - 38033486
Alignment:
| Q |
14 |
agagtgaaagttttgatgggagttgttgaatgcatgctatatcttcatgaggagtggcctgaagttgattacgatctcaagacaagtagtgttttgttat |
113 |
Q |
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| T |
38033759 |
agagtgaaagttttgatgggagttgttgaatgcatgctatatcttcatgaggagtggcctgaagttgattacgatctcaagacaagtagtgttttgttat |
38033660 |
T |
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| Q |
114 |
ctgataaactagaaccattgatttcaaggtttcaagttggagaaagaaacaacagtagaagaagtaagaatctctatcactttattaatttataatggca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38033659 |
ctgataaactagaaccattgatttcaaggtttcaagttggagaaagaaacaacagtagaagaagtaagaatctctatcactttattaatttataatggca |
38033560 |
T |
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| Q |
214 |
atatcatgttttggtgcgcacaatttctttcaaatagttgagagtcgcacgttagattaaggcagattaccctc |
287 |
Q |
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| T |
38033559 |
atatcatgttttggtgcgcacaatttctttcaaatagttgagagtcgcacgttagattaaggcagattaccctc |
38033486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 22628481 - 22628419
Alignment:
| Q |
129 |
cattgatttcaaggtttcaagttggagaaagaaacaacagtagaagaagtaagaatctctatc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
22628481 |
cattgatttcaaggtttcaagttggagaaagaaacaacactcgaaaaagtaagaatctctatc |
22628419 |
T |
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