View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_64 (Length: 256)
Name: NF2125_high_64
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 10075247 - 10075028
Alignment:
| Q |
19 |
ggtgaacacattctgataaatatactagcaagactttcatcactcatttgtcagaattgcaaaaattgaaatggttttaatagcgacaagcagaaactca |
118 |
Q |
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| T |
10075247 |
ggtgaacacattctgatatatatactagcaagactttcatcactcatttgtcagaattgcaaaaattgaaatggcgttaatagcgacaagaagaaactca |
10075148 |
T |
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| Q |
119 |
cgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtcc |
218 |
Q |
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| T |
10075147 |
cgtcagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtcc |
10075048 |
T |
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| Q |
219 |
gcatcttcaaatgtctgaaa |
238 |
Q |
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| T |
10075047 |
gcatcttcaaatgtctgaaa |
10075028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 10064510 - 10064311
Alignment:
| Q |
38 |
atatactagcaagactttcatcactcatttgtcagaattgcaaaaattgaaatggttttaatagcgacaagcagaaactcacgtgagatacagaagagac |
137 |
Q |
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| T |
10064510 |
atatacttgcaaggctttcatccctgattgaccagaatagcaaaa-ttgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtc |
10064412 |
T |
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| Q |
138 |
atatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatgtctgaa |
237 |
Q |
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| T |
10064411 |
atatttgtcagaagggatggctgctgcatggcaaggttcttccattcttctttgtcaatcttcccatcatgatttgtgtccacttcctcaaatgtctgaa |
10064312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 10054380 - 10054222
Alignment:
| Q |
80 |
aaaattgaaatggttttaatagcgacaagcagaaactcacgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtag |
179 |
Q |
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| T |
10054380 |
aaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttc |
10054281 |
T |
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| Q |
180 |
aattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatgtctgaaa |
238 |
Q |
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| T |
10054280 |
cattcttctctgtcaatcttcccatcatgatttgtgtccacttcctcaaacgtctgaaa |
10054222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 10032468 - 10032310
Alignment:
| Q |
80 |
aaaattgaaatggttttaatagcgacaagcagaaactcacgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtag |
179 |
Q |
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| T |
10032468 |
aaaattgaaatggtgttaatagcaacaagaagacactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttc |
10032369 |
T |
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| Q |
180 |
aattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatgtctgaaa |
238 |
Q |
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| T |
10032368 |
cattcttctctgtcaatcttcccatcatgatttgtgtccacttcctcaaacgtctgaaa |
10032310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 56203175 - 56203050
Alignment:
| Q |
110 |
agaaactcacgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatga |
209 |
Q |
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| T |
56203175 |
agaaactcacttcagatactgaagagtcatatttttcagaagggatggatgccgcaagacaaggtttcgccattcttccttgtcaatcttcccatcatgt |
56203076 |
T |
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| Q |
210 |
tttctgtccgcatcttcaaatgtctg |
235 |
Q |
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| T |
56203075 |
tttgtatcagcttcctcaaatgtctg |
56203050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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