View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_7 (Length: 510)
Name: NF2125_high_7
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 42602603 - 42602098
Alignment:
| Q |
1 |
agcttcacaagacacttcatgatggtagtggaggagcattgagagactttttgggcctcattcgtagcaccaatcctacaattgttgttatggcagagca |
100 |
Q |
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| T |
42602603 |
agcttcacaagacacttcatgatggtagtggaggagcattgagagactttttgggcctcattcgtagcaccaatcctacaattgttgttatggcagagca |
42602504 |
T |
|
| Q |
101 |
agaagcggaacacaatgaggcaaggttggactcaagagtatgcaattcattgaaatattactcagcgctgtttgattcgattgatcacagtggccttcca |
200 |
Q |
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| T |
42602503 |
agaagcggaacacaatgaggcaaggttggactcaagagtatgcaattcattgaaatattactcagcgctgtttgattcgattgatcacagtggccttcca |
42602404 |
T |
|
| Q |
201 |
ttagagagtccgatgaggatcaagatagaggagatgttagctagggagataaggaacatcgttgcttgcgaaggaagggacaggttggagaggcaccaga |
300 |
Q |
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| T |
42602403 |
ttagagagtccgatgaggatcaagatagaggagatgttagctagggagataaggaacatcgttgcttgcgaaggaagggacaggttggagaggcaccaga |
42602304 |
T |
|
| Q |
301 |
gttttgggaattggagaaagatgatagtggagcatggagggttcagatgcatgggagtcactgatagggaactgattcagagccagtttctgttgaagat |
400 |
Q |
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| T |
42602303 |
gttttgggaattggagaaagatgatagtggagcatggagggttcagatgcatgggagtcactgatagggaactgattcagagccagtttctgttgaaaat |
42602204 |
T |
|
| Q |
401 |
gtattcttgtgataattacagtgttcagaagcaggagcaggaaggagcaacagcacttactttgggttggcttgatcaacctctctacacagtatattct |
500 |
Q |
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| T |
42602203 |
gtattcttgtgataattacagtgttcagaagcaggagcaggaaggagcaacagcacttactttgggttggcttgatcaacctctctacacagtatcttct |
42602104 |
T |
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| Q |
501 |
tcgaca |
506 |
Q |
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| T |
42602103 |
tggaca |
42602098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 31322201 - 31322118
Alignment:
| Q |
47 |
ctttttgggcctcattcgtagcaccaatcctacaattgttgttatggcagagcaagaagcggaacacaatgaggcaaggttgga |
130 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||| | ||||||||||||||| |
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| T |
31322201 |
ctttttggttctcattcgtaacaccaatcctacaattgttgttatggcagaacaataagtggaacaaattgaggcaaggttgga |
31322118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 31322075 - 31322003
Alignment:
| Q |
391 |
tgttgaagatgtattcttgtgataattacagtgttcagaagcaggagcaggaaggagcaacagcacttacttt |
463 |
Q |
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||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||| | ||||| |||| |
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| T |
31322075 |
tgttgaagatgtatttttgtgataattatggtgttcagaagtaggagaaggaaggagcaaaaacacttgcttt |
31322003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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