View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_8 (Length: 499)
Name: NF2125_high_8
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Original strand, 3054410 - 3054881
Alignment:
| Q |
18 |
aaaaccaatttagaagaacaaaaatatagttcatatttttaaccatgcaaagtccactttaaaagaacacaaatcctttgttgagattgtaaattgnnnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054410 |
aaaaccaatttagaagaacaaaaatatagttcatatttttaaccatgcaaagtccactttaaaagaacacaaatcctttgttgagattgtaaattatttt |
3054509 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnatcaaaaatggaagtatatcatacgtctgttatgtccagatggttaaaccaacttatgacttatgagttgaccaggtccaagtctac |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054510 |
catttttatttttatcaaaaatggaagtatatcatacgtctgttatatccagatggttaaaccaacttatgacttatgagttgaccaggtccaagtctac |
3054609 |
T |
|
| Q |
218 |
acaaagattattcagcagagtaatgactaagtgatgaaatttttatggacaaaaacaattgctattttctataaaaatcatatgaataaaattgagatag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054610 |
acaaagattattcagcagagtaatgactaagtgatgaaatttttatggacaaaaacaattgctattttctataaaaatcatatgaataaaattgagatag |
3054709 |
T |
|
| Q |
318 |
aatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054710 |
aatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcca |
3054809 |
T |
|
| Q |
418 |
ttggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg |
489 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054810 |
ttggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg |
3054881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 318 - 489
Target Start/End: Original strand, 3033848 - 3034019
Alignment:
| Q |
318 |
aatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcca |
417 |
Q |
| |
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|||||||||||||||||| ||||||| ||| ||||||| || | || ||||||||||||||| || |||| ||||||||||||| | |||||||||| |
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| T |
3033848 |
aatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagcca |
3033947 |
T |
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| Q |
418 |
ttggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg |
489 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
3033948 |
ttggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcctttg |
3034019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 318 - 489
Target Start/End: Original strand, 3041887 - 3042059
Alignment:
| Q |
318 |
aatctaaacatggcttccactctactgcttcccttt-cttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcc |
416 |
Q |
| |
|
||||||||||| |||||| ||||||| ||| ||||| || || | || |||||||||||||||||| |||| ||||||||||||| | ||||||||| |
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| T |
3041887 |
aatctaaacatcgcttcctctctactcctttccttttctcctatactcgctgattcttcaatccatcggtgttgtagctcaaaccaatagtactatagcc |
3041986 |
T |
|
| Q |
417 |
attggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg |
489 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
3041987 |
attggtgattcttttactgctgacaccagcaactctacatggttactttcaccttctggtgactttgcctttg |
3042059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 363 - 489
Target Start/End: Complemental strand, 3064545 - 3064419
Alignment:
| Q |
363 |
tcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagccattggtgattcttttactgctgaaacaagcaactctacatggttgc |
462 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||| || |||| ||||||||||||||||||||| |||| || | |||| ||||||||| |
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| T |
3064545 |
tcactgattctgcaatccatctgtgttgtagctcaaaccaaaagtaccatagtcattggtgattcttttactgcacaaaccagtacctctccatggttgc |
3064446 |
T |
|
| Q |
463 |
tttccccttctggtgactttgcctttg |
489 |
Q |
| |
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|||| |||||||||||||||||||||| |
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|
| T |
3064445 |
tttcaccttctggtgactttgcctttg |
3064419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 489
Target Start/End: Complemental strand, 3072265 - 3072114
Alignment:
| Q |
338 |
tctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagccattggtgattcttttactgct |
437 |
Q |
| |
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|||||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||| |||||||| | || | | |
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| T |
3072265 |
tctacttcttcccttttttctcttctcactgattcttcaatccatcagtgttgtagctcaaaccaaaagtaccatagcagctggtgattttcatatttca |
3072166 |
T |
|
| Q |
438 |
gaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg |
489 |
Q |
| |
|
||||| | || |||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
3072165 |
gaaaccaacacctctccatggttgctttcaccttctggtgactttgcctttg |
3072114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 391 - 487
Target Start/End: Complemental strand, 3066554 - 3066458
Alignment:
| Q |
391 |
tagctcaaaccaaaaacactatagccattggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctt |
487 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| |||| | || |||| |||||||| |||| ||||||||||||||| |||| |
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| T |
3066554 |
tagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttcctt |
3066458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 489
Target Start/End: Complemental strand, 3068516 - 3068443
Alignment:
| Q |
416 |
cattggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg |
489 |
Q |
| |
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||||||||||||||||||||| || || |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
3068516 |
cattggtgattcttttactgcagataccggcaactctccatggttgctttcaccttctggtgactttgcctttg |
3068443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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