View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_84 (Length: 242)
Name: NF2125_high_84
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_84 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 34294842 - 34294626
Alignment:
| Q |
8 |
atcaaaaataagtaaaatagaaataagtgtaaacattaagaagaagaattgaaacaagtgtcacacatacaagcttgattttggccactattaattgttt |
107 |
Q |
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| T |
34294842 |
atcaaaaataagtaaaatagaaataagtgtaaacattaagaagaagaattgaaacaagtgtcacacatacaagcttgattttggccactattaattgtt- |
34294744 |
T |
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| Q |
108 |
actttatgaactatagataacaatagggcttctaacaatgtaacgagggtttctccaaataagtgaacctgatacaattttcatgcttgccatagatttt |
207 |
Q |
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| T |
34294743 |
actttatgaactatagataacaatagggcttctaacaatgtaacgagggtttctccaaataagtgaacctgatacaattttcatgcttgccatagatttt |
34294644 |
T |
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| Q |
208 |
gctttcacaactaccttg |
225 |
Q |
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|||||||||||||||||| |
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| T |
34294643 |
gctttcacaactaccttg |
34294626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 12725664 - 12725813
Alignment:
| Q |
75 |
tacaagcttgattttggccactattaattgtttactttatgaactatagataacaatagggcttctaacaatgtaacgagggtttctccaaataagtgaa |
174 |
Q |
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||||||||||| ||| ||||| |||||||| |||||| | ||| ||||||||||||||||||||||| || ||||||||| ||||||||||||| ||| |
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| T |
12725664 |
tacaagcttgactttttccactgttaattgta-actttacggactgtagataacaatagggcttctaacgatataacgagggcttctccaaataagggaa |
12725762 |
T |
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| Q |
175 |
cctgatacaattttcatgcttgccatagattttgctttcacaactaccttg |
225 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12725763 |
gctgatacaattttcatacttgccatagattttgctttcacaactaccttg |
12725813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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