View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_87 (Length: 240)
Name: NF2125_high_87
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_87 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: scaffold0186 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 26741 - 26515
Alignment:
| Q |
3 |
tcaaagatagaaaataattcacctctcactcatgctcatcagtcaatattcactagtgtatccaaatgtattccttccacaaaaatcacgtggaacatta |
102 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26741 |
tcaaagatagaaaataattcacctttccctcatgctcatcagtcaagattcactggtgtacccaaatgtattccttccacaaaaatcacgtggaacatta |
26642 |
T |
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| Q |
103 |
gcgagggagaaaaaatggtaatgaaaataaaaagtggttacgccattgacaaaacatggttaagtcaatcacagttttggttagattttctaaaag---- |
198 |
Q |
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| T |
26641 |
gtgagggagaagaaatgggaatgaaaataaaaagtggttacaccatggacaaaacatggttaagtcaatcacatatttggttagtttttttaaaagtctg |
26542 |
T |
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| Q |
199 |
---cagacaaattttacggcgatatgt |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
26541 |
ttaaagacaaattttacggcgatatgt |
26515 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 23109362 - 23109435
Alignment:
| Q |
123 |
atgaaaataaaaagtggttacgccattgacaaaacatggttaagtcaatcacagttttggttagattttctaaa |
196 |
Q |
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| T |
23109362 |
atgaaaatataaattggttatacctttgataaaacatgattaagtctatctcagttttggttagattttctaaa |
23109435 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35662906 - 35662818
Alignment:
| Q |
1 |
tgtcaaagatagaaaataattcacctctcactcatgctcatcagtcaatattcactagtgtatc-caaatgtattccttccacaaaaat |
88 |
Q |
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| T |
35662906 |
tgtcaaatatggacaataattaacctcttactcatgctcattagtcaaaattcataagtgtgtctcaaatgtattcctttcacataaat |
35662818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 11354939 - 11355007
Alignment:
| Q |
15 |
aataattcacctctcactcatgctcatcagtcaatattcactagtgtatccaaatgtattccttccaca |
83 |
Q |
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| T |
11354939 |
aatagttcacctctcacccatgctcattagtcaagattatctaatttacccaaatgtattcctttcaca |
11355007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1084823 - 1084876
Alignment:
| Q |
1 |
tgtcaaagatagaaaataattcacctctcactcatgctcatcagtcaatattca |
54 |
Q |
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| T |
1084823 |
tgtcaaagatggacaatagttcacctttcactcatgctcatcagacaagattca |
1084876 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 15343335 - 15343267
Alignment:
| Q |
15 |
aataattcacctctcactcatgctcatcagtcaatattcactagtgtatccaaatgtattccttccaca |
83 |
Q |
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|||| |||||||||||| ||||||||| |||||| ||| ||||| | ||||||||||||||| |||| |
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| T |
15343335 |
aatagttcacctctcacccatgctcattagtcaagattatctagttttcccaaatgtattcctttcaca |
15343267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 17226447 - 17226371
Alignment:
| Q |
20 |
ttcacctctcactcatgctcatcagtcaatattcactagtgtatccaaatgtattccttccacaaaaatcacgtgga |
96 |
Q |
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| T |
17226447 |
ttcacctctcagtcatgctcatcaatagagattcactaatgtgcctgaatgtactccttccacaaaaatcgcgtgga |
17226371 |
T |
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