View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_high_93 (Length: 230)
Name: NF2125_high_93
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_high_93 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 35271102 - 35270904
Alignment:
| Q |
16 |
ggatttcctgaaacggcatatataacttattcactgagaagtctgtcatttagtttcagtttgaaatacttgagttatgcttggtaatgatctccaattt |
115 |
Q |
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| T |
35271102 |
ggatttcctgaaacggcatatataacttattcactgagaagtctgtcatttagtttcagtttgaaatacttgagttatgcttggtaacgatctccaattt |
35271003 |
T |
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| Q |
116 |
ttagttaacgatcctgcactgttaatttatcaacccgtatatatatactcactctgtctgtcatgcaatgaaacactttcaagttttaattctctcagt |
214 |
Q |
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| T |
35271002 |
ttagttaacgatcctgcactgttaatttatcaacccgtatatatatactcactctggctgtcatgcaatgaaacacttttaagttttaattctctcagt |
35270904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 35263685 - 35263556
Alignment:
| Q |
16 |
ggatttcctgaaacggcatatataacttattcactgagaagtctgtcatttagtttcagtttgaaatacttgagttatgcttggtaatgatctccaattt |
115 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||| ||||||||| |
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| T |
35263685 |
ggatttcctaaaacggcatatataacttattcactgagaagtctgtcatttagtttcagcttgaaatacttaagttgtgctttgtaacagcctccaattt |
35263586 |
T |
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| Q |
116 |
ttagttaacgatcctgcactgttaatttatc |
146 |
Q |
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| T |
35263585 |
ttagttaacg-tcctgcattgttaatttatc |
35263556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 35252655 - 35252616
Alignment:
| Q |
107 |
ctccaatttttagttaacgatcctgcactgttaatttatc |
146 |
Q |
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| T |
35252655 |
ctccaatttttagttaacgaacctgtactgttaatttatc |
35252616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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