View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_100 (Length: 236)
Name: NF2125_low_100
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_100 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 18204899 - 18205036
Alignment:
| Q |
40 |
gtttctagatggaaactgggagtggaaagattcaagttaatgattctctcacacaacctggaatcactcctagtgataacgtggacaattccgacagaga |
139 |
Q |
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| T |
18204899 |
gtttctagatggaaactgggagtggaatgattcaagttaatgattctctcacacaacctggaatcactcctagtgataacgtggacaattccgacagaga |
18204998 |
T |
|
| Q |
140 |
tcaatctcaatccccaactgaccttattcatcctctta |
177 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
18204999 |
tcaatctcaatccctaactgaccttattcatcctctta |
18205036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 4899365 - 4899503
Alignment:
| Q |
40 |
gtttctagatggaaactgggagtggaaagattcaagttaatgattctctcacacaacctggaatcactcctagtgataacgtggacaattccgacagaga |
139 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4899365 |
gtttctagatggaaactgggagtggaatgattcaagttaatgattctctcacacaacctggaaccactcttagtgataacgtggacaattccgacagaga |
4899464 |
T |
|
| Q |
140 |
tcaatctcaatccccaactgaccttattcatcctcttac |
178 |
Q |
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| T |
4899465 |
tcaatctcaatccccaactgaccttattcatcctcttac |
4899503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 19493210 - 19493072
Alignment:
| Q |
40 |
gtttctagatggaaactgggagtggaaagattcaagttaatgattctctcacacaacctggaatcactcctagtgataacgtggacaattccgacagaga |
139 |
Q |
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| T |
19493210 |
gtttctagatggaaactaggagtggaatgattcaagttaatgattctctcacacaacctggaatcactcctagtgataatgtggacaattccgacagaga |
19493111 |
T |
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| Q |
140 |
tcaatctcaatccccaactgaccttattcatcctcttac |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
19493110 |
tcaatctcaatccccaactgaccttattcatcctcttac |
19493072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 7582741 - 7582603
Alignment:
| Q |
40 |
gtttctagatggaaactgggagtggaaagattcaagttaatgattctctcacacaacctggaatcactcctagtgataacgtggacaattccgacagaga |
139 |
Q |
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|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |
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| T |
7582741 |
gtttctagatggaaattgggagtggaatgattcaagttaatgattctctcacacaacctgaaaacactcatagtgataacgtggacaattccgacagaga |
7582642 |
T |
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| Q |
140 |
tcaatctcaatccccaactgaccttattcatcctcttac |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
7582641 |
tcaatctcaatccccaactgaccttattcatcctcttac |
7582603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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