View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_low_108 (Length: 215)

Name: NF2125_low_108
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_low_108
NF2125_low_108
[»] chr2 (23 HSPs)
chr2 (1-177)||(10348626-10348802)
chr2 (4-197)||(10372708-10372901)
chr2 (4-152)||(10336637-10336782)
chr2 (4-184)||(10353971-10354149)
chr2 (7-192)||(7114785-7114965)
chr2 (4-149)||(9316851-9316999)
chr2 (28-153)||(9060269-9060397)
chr2 (4-152)||(9283349-9283497)
chr2 (4-107)||(9329425-9329528)
chr2 (7-113)||(12018128-12018234)
chr2 (7-107)||(9321820-9321920)
chr2 (4-128)||(9357942-9358066)
chr2 (4-112)||(9292754-9292862)
chr2 (4-107)||(8572722-8572824)
chr2 (7-110)||(9275352-9275455)
chr2 (4-109)||(12011811-12011916)
chr2 (1-109)||(12005383-12005491)
chr2 (28-77)||(9365445-9365494)
chr2 (4-109)||(11986743-11986848)
chr2 (1-74)||(14551142-14551215)
chr2 (4-107)||(7612722-7612825)
chr2 (28-100)||(8578752-8578824)
chr2 (5-107)||(17565334-17565436)
[»] chr4 (1 HSPs)
chr4 (4-184)||(26575705-26575880)
[»] scaffold0667 (1 HSPs)
scaffold0667 (5-152)||(5286-5436)
[»] chr3 (2 HSPs)
chr3 (7-128)||(37463351-37463472)
chr3 (33-109)||(39428733-39428809)
[»] chr8 (1 HSPs)
chr8 (4-152)||(41965897-41966045)
[»] chr1 (4 HSPs)
chr1 (4-92)||(29452586-29452674)
chr1 (4-92)||(29467060-29467148)
chr1 (4-128)||(29424040-29424164)
chr1 (4-128)||(29442558-29442682)
[»] chr5 (1 HSPs)
chr5 (28-109)||(36225600-36225681)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 10348626 - 10348802
Alignment:
Q  1 tttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggaga 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348626 tttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggaga 10348725  T
Q  101 agatttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttag 177  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  10348726 agatttcggcgagaatatccggcggaagttcagccgccattccaaggaatgagaaggaaggttctgctagggtttag 10348802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 10372708 - 10372901
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    ||||||||||||||||||||| | ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10372708 aggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 10372807  T
Q  104 tttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttagggttttttgtttcttacttc 197  Q
     ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||  |||||| ||||    
T  10372808 cttcggcgagaatatcaggcggaagttcagccgccattgcaaagaaggagaaggaaggttctgctagggcttagggtttttcatttcttccttc 10372901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 10336637 - 10336782
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10336637 aggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaaga 10336736  T
Q  104 tttcggcgagaatatccggcggaagctcagccgccattgcaaggaagga 152  Q
    |||||| |||||| |||||||||||   | ||||||||| |||||||||    
T  10336737 tttcggagagaatttccggcggaag---atccgccattgtaaggaagga 10336782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 10353971 - 10354149
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||||||||||||||||   |||||||||| |||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||| | ||    
T  10353971 aggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaagga 10354070  T
Q  104 tttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttagggttttt 184  Q
    |||||| |||||| ||||| ||||| ||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||    
T  10354071 tttcggtgagaatttccggtggaagttcagccgccattgtaaggaag--gaatgaaggttctgctagggtttagggttttt 10354149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 7114965 - 7114785
Alignment:
Q  7 tgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagattt 106  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||  ||| |||| ||| ||||||||||    
T  7114965 tgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcgagagaagattt 7114866  T
Q  107 cggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttc-tgctagggtttagggttttttgtttctt 192  Q
    |||  || || ||||||||||| ||||||||||||    ||||||||  | ||||||| | ||||||||||||||||||||||||||    
T  7114865 cggatagtatttccggcggaagatcagccgccatt----ggaaggag--gcaaggttcgttctagggtttagggttttttgtttctt 7114785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 9316851 - 9316999
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    ||||||||||||||||| ||| | ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  9316851 aggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaaga 9316950  T
Q  104 tttcggcgagaatatccggcggaag---ctcagccgccattgcaaggaa 149  Q
    |||||||||| || |||||||||||    ||||||||||||| ||||||    
T  9316951 tttcggcgagtatttccggcggaagaccgtcagccgccattggaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 9060397 - 9060269
Alignment:
Q  28 gaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcggcgagaatatccggcggaa 127  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||| || || ||||||||||    
T  9060397 gaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagatttcggcaagtatttccggcggaa 9060298  T
Q  128 g---ctcagccgccattgcaaggaaggag 153  Q
    |    ||||||||||||| ||||||||||    
T  9060297 gaacatcagccgccattggaaggaaggag 9060269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 9283497 - 9283349
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    ||||||||||||||||||||| | ||||| |||| ||||  ||||||||| || ||||||||||||||||| |||||||| || ||||||| ||||||||    
T  9283497 aggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagcaggagaaga 9283398  T
Q  104 tttcggcgagaatatccggcggaagctcagccgccattgcaaggaagga 152  Q
    ||||||| || || ||||||||||| || | |||||||| |||||||||    
T  9283397 tttcggcaagtatgtccggcggaagatcggacgccattggaaggaagga 9283349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 9329425 - 9329528
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||||||  |||| ||| | |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||    
T  9329425 aggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagagga 9329524  T
Q  104 tttc 107  Q
    ||||    
T  9329525 tttc 9329528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 12018234 - 12018128
Alignment:
Q  7 tgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagattt 106  Q
    ||||| ||| |||| ||| | |||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  12018234 tgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcgggagaagattt 12018135  T
Q  107 cggcgag 113  Q
    |||||||    
T  12018134 cggcgag 12018128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 9321820 - 9321920
Alignment:
Q  7 tgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagattt 106  Q
    |||||||||||||| | | | |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| |||||    
T  9321820 tgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggattt 9321919  T
Q  107 c 107  Q
    |    
T  9321920 c 9321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 9357942 - 9358066
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    ||||||||||| ||||| ||| | ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||| ||||||||| | || |    
T  9357942 aggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaa 9358041  T
Q  104 tttcggcgagaatatccggcggaag 128  Q
    ||| |||||| || |||||||||||    
T  9358042 ttttggcgagtatttccggcggaag 9358066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 9292754 - 9292862
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||||||  ||||  || | |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| |||| |||||||||||    
T  9292754 aggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggagaaga 9292853  T
Q  104 tttcggcga 112  Q
    |||||||||    
T  9292854 tttcggcga 9292862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 8572824 - 8572722
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||||||| |||| ||| | ||||||||||  ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||    
T  8572824 aggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtga-tttactggtatgcgggagaaga 8572726  T
Q  104 tttc 107  Q
    ||||    
T  8572725 tttc 8572722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 9275352 - 9275455
Alignment:
Q  7 tgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagattt 106  Q
    |||||||||||||| ||| | ||||| || || |||||||||||||||||| |||||||||||| ||||||||||| ||| ||||| |||||||||||||    
T  9275352 tgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaaccgggagaagattt 9275451  T
Q  107 cggc 110  Q
    ||||    
T  9275452 cggc 9275455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 12011916 - 12011811
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||| ||| |||| ||| | |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |    |||||||||||||||    
T  12011916 aggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaaga 12011817  T
Q  104 tttcgg 109  Q
    ||||||    
T  12011816 tttcgg 12011811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 12005491 - 12005383
Alignment:
Q  1 tttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggaga 100  Q
    ||||| ||||||||| |||| ||| | |||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |   |||||||||||||    
T  12005491 tttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgggaga 12005392  T
Q  101 agatttcgg 109  Q
    |||||||||    
T  12005391 agatttcgg 12005383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 9365445 - 9365494
Alignment:
Q  28 gaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaag 77  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9365445 gaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 11986848 - 11986743
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||| ||| |||| ||| | ||||| |||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |    |||||||||||||||    
T  11986848 aggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaaga 11986749  T
Q  104 tttcgg 109  Q
    ||||||    
T  11986748 tttcgg 11986743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14551142 - 14551215
Alignment:
Q  1 tttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggag 74  Q
    ||||||||||| |||||||| ||| | |||||||||| ||||| |||||||||||| |||||||||||| ||||    
T  14551142 tttaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 7612722 - 7612825
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||||||  |||| ||| | ||||| |||||||||||||| ||||| ||  |||||||||||||||| || | || |||||||||||| |||| ||    
T  7612722 aggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgagagagga 7612821  T
Q  104 tttc 107  Q
    ||||    
T  7612822 tttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 8578824 - 8578752
Alignment:
Q  28 gaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggaga 100  Q
    ||||| || ||||||  ||||||||| ||  ||||||||||||||||||| |||| |||||||||||||||||    
T  8578824 gaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggaga 8578752  T

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Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 17565436 - 17565334
Alignment:
Q  5 ggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagat 104  Q
    ||||||||||| |||| ||  | ||||| |||||  ||||||||||||| || |||||||||| |||||| || |||| ||| |||||||| |||| |||    
T  17565436 ggtgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggat 17565337  T
Q  105 ttc 107  Q
    |||    
T  17565336 ttc 17565334  T

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Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 26575705 - 26575880
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||||||||||||||||   |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  26575705 aggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaaga 26575804  T
Q  104 tttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttagggttttt 184  Q
    |||||| |||||| ||||| ||||| ||||||||||||| |||||||  ||| |||||||   ||||||||||||||||||    
T  26575805 tttcggtgagaatttccggtggaagttcagccgccattgtaaggaag--gaatgaaggtt---ctagggtttagggttttt 26575880  T

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Target: scaffold0667 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 5286 - 5436
Alignment:
Q  5 ggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagat 104  Q
    |||||||||||||||| ||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5286 ggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggagaagat 5385  T
Q  105 ttcggcgagaatatccggcggaa---gctcagccgccattgcaaggaagga 152  Q
    ||| |||||  | ||||||||||   | |||| |||||||| |||||||||    
T  5386 ttctgcgagtgtgtccggcggaaggcggtcagacgccattggaaggaagga 5436  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 37463351 - 37463472
Alignment:
Q  7 tgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagattt 106  Q
    |||||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||| |||||    
T  37463351 tgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggattt 37463450  T
Q  107 cggcgagaatatccggcggaag 128  Q
    ||||||| || |||||||||||    
T  37463451 cggcgagtatttccggcggaag 37463472  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 39428733 - 39428809
Alignment:
Q  33 gattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcgg 109  Q
    |||||||||||||| | ||||||| |||||||||||| |||| || ||||  |||||||||||||||| ||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcgg 39428809  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 41966045 - 41965897
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    ||||||||||||||||| ||| | |||||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||  |||||||||    
T  41966045 aggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaactgattttaccggtaatagggagaaga 41965946  T
Q  104 tttcggcgagaatatccggcggaagctcagccgccattgcaaggaagga 152  Q
    |||| ||||| || || ||||| || ||| ||| |||||  ||||||||    
T  41965945 tttcagcgagtatttctggcggtagatcaaccgtcattgtgaggaagga 41965897  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 29452674 - 29452586
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaa 92  Q
    |||||||| |||||||| ||| | |||||||||| ||||| |||||||||||||||||| ||||||||||| || |||| |||||||||    
T  29452674 aggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29452586  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 29467148 - 29467060
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaa 92  Q
    |||||||| |||||||| ||| | |||||||||| ||||| |||||||||||||||||| ||||||||||| || |||| |||||||||    
T  29467148 aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 29424040 - 29424164
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||| ||||||||  || | ||||||||||  |||| |||||||||||||||||| ||||||||||| || |||| |||||||||  | |||| ||    
T  29424040 aggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaacagagagagga 29424139  T
Q  104 tttcggcgagaatatccggcggaag 128  Q
    || ||| ||| || |||||||||||    
T  29424140 ttccggtgagtatctccggcggaag 29424164  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 29442682 - 29442558
Alignment:
Q  4 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 103  Q
    |||||||| |||||||| ||  | |||||||||| ||||| ||||||||| || ||||| ||||||||||| || |||| | |||||||  | |||| ||    
T  29442682 aggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagagga 29442583  T
Q  104 tttcggcgagaatatccggcggaag 128  Q
    || |||  || || |||||||||||    
T  29442582 ttccggtaagtatctccggcggaag 29442558  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 36225600 - 36225681
Alignment:
Q  28 gaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcgg 109  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||  ||  |||||||||||| ||||||||    
T  36225600 gaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcgggagaggatttcgg 36225681  T

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