View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_14 (Length: 451)
Name: NF2125_low_14
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 112 - 441
Target Start/End: Complemental strand, 29990232 - 29989905
Alignment:
| Q |
112 |
tttctctacacttaaaatatgtgaatctaatcgtaacttgattgaagnnnnnnnngatttcatgtgtacgcattcatttataattatttaatttctcaaa |
211 |
Q |
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| T |
29990232 |
tttctctatacttaaaatatgtgaatctaatcgtaacttgattgaa--aaaaaaaggttttatgtgtacgcattcatttataattatttaatttctcaaa |
29990135 |
T |
|
| Q |
212 |
ctcaacatctataaaaagaattataaatgaatcacacatataatcttatattattacattttaacaacaattatttattttaaaattaaaaatgtgataa |
311 |
Q |
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| T |
29990134 |
ctcaacatctataaaaagaattataaatgaatcacacatataatcttatattattacatttaaacaacaattatttattttaaaattaaaaatgtgataa |
29990035 |
T |
|
| Q |
312 |
ctctacaaaaatgtgtgtccttataagcaccttccattnnnnnnnnnnnnnnnnnncaatataccaatattcaaacaatgtttattggattaggctctcc |
411 |
Q |
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| T |
29990034 |
ctctacaaaaatgtgtgtccttataagcaccgtccatttctctctctctctctctccaatataccaatattcaaacaatgtttattggattaggctctca |
29989935 |
T |
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| Q |
412 |
attgaaaatggccttagttgcctacctatg |
441 |
Q |
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| T |
29989934 |
attgaaaatggccttagttgcctacctatg |
29989905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 29990356 - 29990285
Alignment:
| Q |
17 |
aggaacaatgtattgttatatacaggggttagagttcgaattttgaacacttcacttgttaaatttaaaaag |
88 |
Q |
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| T |
29990356 |
aggaacaatgtattgttatatgcaggggttagagttcgaactttagacacttcatttgttaactttaaaaag |
29990285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 6182671 - 6182624
Alignment:
| Q |
246 |
cacatataatcttatattattacattttaacaacaattatttatttta |
293 |
Q |
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|||| ||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
6182671 |
cacaaataattttatatcattacattttaacaacatttatttatttta |
6182624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 840198 - 840245
Alignment:
| Q |
246 |
cacatataatcttatattattacattttaacaacaattatttatttta |
293 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
840198 |
cacaaataattttatattattacattttaacaacatttacttatttta |
840245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 45549086 - 45549128
Alignment:
| Q |
251 |
ataatcttatattattacattttaacaacaattatttatttta |
293 |
Q |
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||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
45549086 |
ataattttatatcattacattttaacaacatttatttatttta |
45549128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 24120259 - 24120301
Alignment:
| Q |
251 |
ataatcttatattattacattttaacaacaattatttatttta |
293 |
Q |
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||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
24120259 |
ataattttatatcattacattttaacaacatttatttatttta |
24120301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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