View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_23 (Length: 397)
Name: NF2125_low_23
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 146 - 394
Target Start/End: Complemental strand, 47583832 - 47583584
Alignment:
| Q |
146 |
ctagattattgtttaatctagtcctagttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgt |
245 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583832 |
ctagattattgtttaatctagtccttgttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgt |
47583733 |
T |
|
| Q |
246 |
tgctgcttcaattttggcaaattcaaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggct |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583732 |
tgctgcttcaattttggcaaattcaaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggct |
47583633 |
T |
|
| Q |
346 |
aaaagaaatgcctctttttatatgcaaatagtagtatattcttcgacat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
47583632 |
aaaagaaatgcctctttttatatgcaaatagtagtatatttttccacat |
47583584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 47584011 - 47583846
Alignment:
| Q |
1 |
ttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47584011 |
ttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtcc |
47583912 |
T |
|
| Q |
101 |
atccaaaagaactccctgaataacaatnnnnnnngtcattatggactagattattgtttaatctag |
166 |
Q |
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| T |
47583911 |
atccaaaagaactccctgaataacaataaaaaaagtcgttatggactagattattgtttaatctag |
47583846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 179 - 376
Target Start/End: Complemental strand, 47574106 - 47573909
Alignment:
| Q |
179 |
tatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgttgctgcttcaattttggcaaattcaaattgtaa |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
47574106 |
tatttaccttgtagacttctccaaatccacctttgcctatcctgttatctgcagcaaatctgtttgttgctgcttcaatttcggcaaattcaaattgcaa |
47574007 |
T |
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| Q |
279 |
cgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggctaaaagaaatgcctctttttatatgcaaatag |
376 |
Q |
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| T |
47574006 |
ggattccaaagagttaatgtcattcccaactacagaaacaagttttaattctataagttatatggttaaaggaaatgcatctttttgtttgcaaatag |
47573909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 169 - 394
Target Start/End: Complemental strand, 47567229 - 47567004
Alignment:
| Q |
169 |
ctagttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgttgctgcttcaattttggcaaatt |
268 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| || ||||| | || |
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| T |
47567229 |
ctagttgatatatttaccttgtagacttctccaaatccacctttgcctttcctattttctgcagtaaatctgtttgttgctgcttggatattggctagtt |
47567130 |
T |
|
| Q |
269 |
caaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggctaaaagaaatgcctctttttatat |
368 |
Q |
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||||||| || || ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||| |||| |||| ||||||| || |||| | | |
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| T |
47567129 |
caaattgcaaggactccaaagaggtcgtatcattcccaactacaacaacaattttgaattctataagttacatggttaaaggaaatgcttccttttgttt |
47567030 |
T |
|
| Q |
369 |
gcaaatagtagtatattcttcgacat |
394 |
Q |
| |
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|||||||| |||||||| ||| |||| |
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| T |
47567029 |
gcaaatagaagtatatttttctacat |
47567004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 47574294 - 47574170
Alignment:
| Q |
1 |
ttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtcc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||| |
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| T |
47574294 |
ttctgtgttgaagcttggctataacatgaacctcatttttaaactctactgcaccttgcccggagctacttgtaagcctcttcaccgcaatttcttgtcc |
47574195 |
T |
|
| Q |
101 |
atccaaaagaactccctgaataaca |
125 |
Q |
| |
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||||||||||| |||||||| |||| |
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| T |
47574194 |
atccaaaagaattccctgaacaaca |
47574170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 47567407 - 47567290
Alignment:
| Q |
6 |
tgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtccatcca |
105 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||| ||||||||| || |||||| | ||||| |||||| |||||| |||||||||||||| |
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| T |
47567407 |
tgttgaagcttggctataacaagaacctcatttttaa-ctctgttgcaccttg-ccggagcttttcgtaagtctcttcgcagcaatttcttgtccatcca |
47567310 |
T |
|
| Q |
106 |
aaagaactccctgaataaca |
125 |
Q |
| |
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|||||| |||||||| |||| |
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| T |
47567309 |
aaagaattccctgaacaaca |
47567290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 47592515 - 47592472
Alignment:
| Q |
184 |
accttgtagacttctccaaatccacctttgcctatcctgttttc |
227 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
47592515 |
accttgtaaacttctccaaatccacctttgccaatcttgttttc |
47592472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 47698071 - 47698011
Alignment:
| Q |
1 |
ttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtcc |
61 |
Q |
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|||| |||||||| |||||||| || |||||||||||| |||||||||| ||||||||| |
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| T |
47698071 |
ttctatgttgaagtttggctatctctaaaacctcatttttgaactctactgaaccttgtcc |
47698011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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