View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2125_low_29 (Length: 377)
Name: NF2125_low_29
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 41777191 - 41776873
Alignment:
| Q |
1 |
gaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaatcaaaatccttgt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777191 |
gaacctcttgagtaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaatcaaaatccttgt |
41777092 |
T |
|
| Q |
101 |
aagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtgtgtaggcataatctaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777091 |
aagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtgtgtaggcataatctaatg |
41776992 |
T |
|
| Q |
201 |
cagtcacgcagtcagccacatcagtggcaattggttaagatcgaacagtccagataaaataccaagcttgacgtccattcttgattcaatggccaccgat |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41776991 |
cagtcacgcagtcagccacattggtggcaattggttaagatcgaacagtccagataaaataccaagcttgacgtccattcttgattcaatggccaccaat |
41776892 |
T |
|
| Q |
301 |
gtagataggtgcgtgactg |
319 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
41776891 |
gtagctaggtgcgtgactg |
41776873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 41776863 - 41776818
Alignment:
| Q |
313 |
gtgactgcacaaaatccaatccgcatgtgaaagggtatgtctatat |
358 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41776863 |
gtgactgcacaaaatccaatccacatgtgaaagggtatgtctatat |
41776818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 41308348 - 41308303
Alignment:
| Q |
178 |
ttgtgtgtaggcataatctaatgcagtcacgcagtcagccacatca |
223 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
41308348 |
ttgtatgtagtcacaatctgatgcagtcacgcagtcagccacatca |
41308303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26956955 - 26957042
Alignment:
| Q |
1 |
gaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaat |
88 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
26956955 |
gaacctcttgagaatgtagaactcaaaaacagacaaagatgatgaaaacatcatcacaaatgttgctgttgcactagcaacctacaat |
26957042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University